Query= MSMg01no267_j19.b1 MSMg01no267_j19.b1 CHROMAT_FILE:
MSMg01no267_j19.b1 PHD_FILE: MSMg01no267_j19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:43 2005
(316 letters)
>mm_chr4_134645182_134645897
Length = 716
Score = 551 bits (285), Expect = e-161
Identities = 303/309 (98%)
Strand = Plus / Minus
Query: 8 ttcctcaggtagaatggaggggtcaggctccccagctaaggtagagaagaaaaagccctg 67
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 656 ttcctcaggtagaatggaggggtcaggctctccagctaaggtagagaagaaaaagccctg 597
Query: 68 ttgggaaagagagtcctcctattcgcacagagctcaggggagctgtcgggatgcggtaga 127
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 596 ttgggaaagagagtcctcctattcgcacagagctcaggagagctgtcgagatgcggtaga 537
Query: 128 ttaagacctttaaatagcagctaaccaggacatacatcaggtgttcattgtatgtttctg 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 ttaagacctttaaatagcagctaaccaggacatacatcaggtgttcattgtatgtttctg 477
Query: 188 taatgaaccagaccccaaagcagcaatcctgggtgctcatttattcaaaacccctgtgtt 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 taatgaaccagaccccaaagcagcaatcctgggtgctcatttattcaaaacccctgtgtt 417
Query: 248 aggctttttttgtaccctgtcccaggaacaagactgacatagggcttccagtatgtgcag 307
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct: 416 aggctttttttgtaccctgtcccaggaacaagacagacatagggcttccagtatgtacag 357
Query: 308 ggaacctac 316
||| |||||
Sbjct: 356 ggagcctac 348
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space: 217049
Effective search space used: 217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no267_j19.g1 MSMg01no267_j19.g1 CHROMAT_FILE:
MSMg01no267_j19.g1 PHD_FILE: MSMg01no267_j19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:43 2005
(250 letters)
>mm_chr4_134494079_134494727
Length = 649
Score = 395 bits (204), Expect = e-114
Identities = 243/264 (92%), Gaps = 15/264 (5%)
Strand = Plus / Plus
Query: 1 ctgatcctctttccaagtgctaggattacacgtgtgtctcaccatgcccagccctattta 60
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 187 ctgatcctctttccaagtgctaggattacacgtgtgtctcaccatgcccaggtctattta 246
Query: 61 gtgtgagtggaggtgccagtcctcccctatgagacacacacacacacagaa-a------- 112
||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 247 gtgtgagtggaggtgccagtcctcccctatgagacacacacacacacagaagagagagag 306
Query: 113 ------agagagagagagagagagagagagagagagagagagtcagtgtgtgctcaaggg 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 agagagagagagagagagagagagagagagagagagagagagtcagtgtgtgctcaaggg 366
Query: 167 gaaaaagcacttctgccaagagataacctgaatttgagtcccaggacagtttaataggac 226
||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 367 gaaaa-gcacttgtgccaagagataacctgaatttgagtcccaggacagtttagtaggac 425
Query: 227 agagccaattctagaaagttgttc 250
|||||||| || ||||||||||||
Sbjct: 426 agagccaactccagaaagttgttc 449
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 649
Length adjustment: 9
Effective length of query: 241
Effective length of database: 640
Effective search space: 154240
Effective search space used: 154240
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
