CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTTGTTTAGATCTGTACCCCATTTTTAGCTGGGTTATTTGTTTTC
TTGATATCTAGTTCTTCTAGTTCTTTATATATTTTGGATATTAGCCCTCT
ATTGGATATGGAGTTGGTAAAAATCCTGGGTAATAAGACTGGGGATTTGA
TTTGATAGAGCAAAAGGAGAAGTGAAGGTCTGACATCAGCCTACCTGTTT
TCCTGGCTGAAGTGGTGATAGCCATTTTTTAAAATAATAATGTGAAAATT
CATTGTTCCGCCTTCTTACCCATCTCCCCTACCCCAGGTACTGTGATTGT
ACACCTGGTTTTGTTTTATTACCCCCCCCTCCATCAAGACACTAAATCTA
AAATGATCTTGTGTGGAAACAATTCTCGATGGTATTGTTACGTATAGAAA
AGTAATATTCTCAGGAAAGAGAAATAGACATATTCTTCTTGGCATTGGTC
TGGACTATTGGAGAAAACAATCAGGCAACGAAGGTACCTGCGTGCCAGTG
TAGTCTTGAACTGGGGATTAGCTGCCTCTGCCTTTTAGTACTTAGAGGCA
ATAGGGGCCACTCAATCAGCAGTGGTCATAGAACATATAACAATTTTTGT
GAAGAAAAATTAGTCTCCAGCAAAGACAATCAGACAAGTCAAGATACCAC
AGAAAAGTCAAGTTCTCCGTTAGAATTCTTAG

NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATAGCTTTGACTATATTATGCAGTC
CTTAGGAAATAAACAGATTAGCCATTGCTCTCCGAAGTTTTTATGTAATA
CACTTGAAAGGTGAGGTATTTAATATTTTATCTTTTTACATAGAAACATA
GTGCTCTCTGATTTATTTCACAACTGTAGGATTATAGTAGACCATCCCGA
TCAACAGGGACTACATGAAGACATCTAGTAAATTCCTAATTCATATCACA
TACTAATAATCTATCATCTACAGATATTTCTGGATCCTTATACGTTTCTT
CCTACTCATGTCTGTCTATGGATAAGATTTAAATAGATACAGTAAAAGAT
TAACAATAAAATTTTACATTACATATTAGCAACTTCAGCATGTTTTTCTC
TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT
TCTTTCTTTCTTTCTTTCTAGCCTTAAATCAAGAACATACATACAAGAAC
ATTCATATTTTCACTTAGACGAAGTACTTTATGTCTTTGCTAGTTTTCTG
AGTTTTAAAAACTATTATATTTGTGCTTTGAGAGGTTATTGGTGAAAGTA
AAGTAATAAGAACATAGCCACTGCTGTAGGATCACTACCAACCTGATACC
TTAGAGACCAAGTAATCATTAA

Query= MSMg01no267_o05.g1 MSMg01no267_o05.g1 CHROMAT_FILE:
MSMg01no267_o05.g1 PHD_FILE: MSMg01no267_o05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:03 2005
         (560 letters)



>mm_chr4_20207984_20208943
          Length = 960

 Score =  760 bits (393), Expect = 0.0
 Identities = 414/421 (98%), Gaps = 1/421 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atagctttgactatattatgcagtccttaggaaataaacagattagccattgctctccga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 atagctttgactatattatgcagtccttaggaaataaacagattagccattgctctccga 383

                                                                       
Query: 61  agtttttatgtaatacacttgaaaggtgaggtatttaatattttatctttttacatagaa 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 382 agtttttatgtaatacacttgaaaggtgaggtatttaatattttatctttttacatggaa 323

                                                                       
Query: 121 acatagtgctctctgatttatttcacaactgtaggattatagtagaccatcccgatcaac 180
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 acatagtgctctctgatttgtttcacaactgtaggattatagtagaccatcccgatcaac 263

                                                                       
Query: 181 agggactacatgaagacatctagtaaattcctaattcatatcacatactaataatctatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 agggactacatgaagacatctagtaaattcctaattcatatcacatactaataatctatc 203

                                                                       
Query: 241 atctacagatatttctggatccttatacgtttcttcctactcatgtctgtctatggataa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 atctacagatatttctggatccttatacgtttcttcctactcatgtctgtctatggataa 143

                                                                       
Query: 301 gatttaaatagatacagtaaaagattaacaataaaattttacattacatattagcaactt 360
           ||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct: 142 gatttaagtagatacagtaaaagattaacaataaaaatttacattagatattagcaactt 83

                                                                       
Query: 361 cagcatgttttt-ctctttctttctttctttctttctttctttctttctttctttctttc 419
            ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82  tagcatgttttttctctttctttctttctttctttctttctttctttctttctttctttc 23

            
Query: 420 t 420
           |
Sbjct: 22  t 22


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space:   522500
Effective search space used:   522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)