BAC Information

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BAC

Clone NameMSMg01-268B11
Chromosome4 (Build37)
Map Location 7,198,933 - 7,199,242
singlet/doubletsinglet
Overlap genenone
Upstream geneCyp7a1, Sdcbp, Nsmaf, LOC100039397, LOC100039414, Tox, LOC100039421, LOC666700
Downstream geneCar8, LOC100039494
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268B11.T7 (MSMg01no268_b11.b1)MSMg01-268B11.TJ (MSMg01no268_b11.g1)
ACCAG408628AG408629
length717714
length of high quality
(start - end)
316 (46 - 361)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no268_b11.b1 PHD_FILE: MSMg01no268_b11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:19 2005CHROMAT_FILE: MSMg01no268_b11.g1 PHD_FILE: MSMg01no268_b11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACACTTGAACTTGACTATAGATATTTACTTAATTATCCCCTACTA
GTGAGCATATATTTTAGGATACACCAGAATGGCTGCCATATGAAAGCATG
GGTGCTGTTCAGACACTGAATTGAGCACATGGGAGGCTTTGGATAAGGAA
TTCTGTGTTGTGATTTTTGTTATAAATATAACTATACCCTGTTACATGTC
ATTTTTCCCCGTAGGGGGAAGGTTGGTTTTCTTCAAATCAGACTCCTGCA
AGAACTTTTCATGTGTGCAGTGATTTCTTAGGCAAGCCTACAACCATTTC
AAGACATTTTAAATAGCTGTCGCCCCTCCCCCCTGAAGGGCCATCTAGGA
AGGCAGAAACAGGATGTGATTTCAGAGACAAAAAAGAGAACTACTGTGAG
AAACAGAGAGGAGTCTCACAAATAGACTCGCAGGCTCAGGGTATTCATTC
TCAGAAGATGCCCACAAGATTCAGGTGCTCCTGGAGTGTGGAATTCAGAG
ACACACTATGGGCAGAAAACAGTCACAAATATAGCACTTACTTTAGCTGT
TTCCATCTTTCCCAGTGTGTGTACACTGTACCTCAGATTACACAAACCAT
AAACCCTATTAATCCTGAAGTATCTACAGAAGAATTAGCTCAAATCTCAA
AGAGGCAACGTCTACTA
CGAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAAACTTTTGTCA
TGAAGGGGTGTTGGATTTTGACAAATGATTTCTCAGCATTTAATGAGATG
ATCATGCGGTTTTGGTCTTTGAGTTTGTTTATATAGTGGATTACAGTGAT
GGATTTCCATATATTAAACCGTCCCTGCATCCCTGGGATGAAGCCTACTT
GGTCATGATGGATGATCGTTTGGATGTGTTCTTGGATTCAGTTTGCGAGG
ATTTTATTGAGTATTTTTGCATCGATATTCATAAGGGAAATTAGTCTGAA
GTTCTCTTCCTTTGTTGTGGGGACCGCCCCGCCGGCAGTCCTAAAGGCGC
CAGGGACTGTAGCTAAGTCATATGACTTGCACCTGACTTCCTCATATAAG
ACACAAACATCTTGAGTGCTGCGCAGGTGTACCAGGATTCAGGTGAATCC
AATTTGGTGGAGATTTGCCCCTGCTGCCCTGATTAGCTGAAGCTGCGTGC
CTGGTGAGGTGGCGTGGCCTGCTGTGCGTGGATGGGAACTGAGAGTATAA
AAGAGTGAGAGGCCCAGGGTTCGTGGGAGATATAAACAAGGGAGATATAA
ACAAGAACAAATAGGACTGAATAAACGTGTGCAGAAGGATCCTGTAGCAG
CGTCGTTCTTGCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_b11.b1 MSMg01no268_b11.b1 CHROMAT_FILE:
MSMg01no268_b11.b1 PHD_FILE: MSMg01no268_b11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:19 2005
         (316 letters)



>mm_chr4_7198729_7199444
          Length = 716

 Score =  600 bits (310), Expect = e-176
 Identities = 310/310 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacacttgaacttgactatagatatttacttaattatcccctactagtgagcata 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gaattcacacttgaacttgactatagatatttacttaattatcccctactagtgagcata 455

                                                                       
Query: 65  tattttaggatacaccagaatggctgccatatgaaagcatgggtgctgttcagacactga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tattttaggatacaccagaatggctgccatatgaaagcatgggtgctgttcagacactga 395

                                                                       
Query: 125 attgagcacatgggaggctttggataaggaattctgtgttgtgatttttgttataaatat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 attgagcacatgggaggctttggataaggaattctgtgttgtgatttttgttataaatat 335

                                                                       
Query: 185 aactataccctgttacatgtcatttttccccgtagggggaaggttggttttcttcaaatc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 aactataccctgttacatgtcatttttccccgtagggggaaggttggttttcttcaaatc 275

                                                                       
Query: 245 agactcctgcaagaacttttcatgtgtgcagtgatttcttaggcaagcctacaaccattt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 agactcctgcaagaacttttcatgtgtgcagtgatttcttaggcaagcctacaaccattt 215

                     
Query: 305 caagacattt 314
           ||||||||||
Sbjct: 214 caagacattt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)