Query= MSMg01no268_h04.b1 MSMg01no268_h04.b1 CHROMAT_FILE:
MSMg01no268_h04.b1 PHD_FILE: MSMg01no268_h04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:44 2005
(193 letters)
>mm_chr4_51998533_51999125
Length = 593
Score = 366 bits (189), Expect = e-106
Identities = 192/193 (99%)
Strand = Plus / Plus
Query: 1 tttaggtttaataatcttattttgtcacagctttaatggatatgatggaaaacacacaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttaggtttaataatcttattttgtcacagctttaatggatatgatggaaaacacacaca 260
Query: 61 caagcatttatttgaggtatctaatgtatcaatttcaactatcccacttctatgtagact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caagcatttatttgaggtatctaatgtatcaatttcaactatcccacttctatgtagact 320
Query: 121 ataaaataattttatgatgaaaagatggttacttcatgggttcaagaagggcaggggcac 180
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataaaataaatttatgatgaaaagatggttacttcatgggttcaagaagggcaggggcac 380
Query: 181 tagaaatgtctgt 193
|||||||||||||
Sbjct: 381 tagaaatgtctgt 393
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 193
Length of database: 593
Length adjustment: 8
Effective length of query: 185
Effective length of database: 585
Effective search space: 108225
Effective search space used: 108225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no268_h04.g1 MSMg01no268_h04.g1 CHROMAT_FILE:
MSMg01no268_h04.g1 PHD_FILE: MSMg01no268_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:44 2005
(667 letters)
>mm_chr4_52108728_52109797
Length = 1070
Score = 973 bits (503), Expect = 0.0
Identities = 594/633 (93%), Gaps = 23/633 (3%)
Strand = Plus / Minus
Query: 43 ttaaaacacactagaagtttgttgagtctacatattcggcaagttagtgccttgtctctc 102
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1070 ttaaaacacactagaagtttgttgagtctacatattcagcaagttagtgccttgtctctc 1011
Query: 103 tttttaattcttgcaagagtcatgggcagggtgaatgtagatttttgtttttcctgcatc 162
||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1010 tttttaatttttgcaagaatcatgggcagggtgaatgtagatttttgtttttcttgcatc 951
Query: 163 caatttagaggattcacgtttcctatatactcatctacaaaatcacagctgctctagcta 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 950 caatttagaggattcacgtttcctatatactcatctacaaaatcacagctgctctagcta 891
Query: 223 gcgaaaactaactccagtgacattcttgaggtatttggagatattgttattacccatcta 282
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 890 gcggaaactaactccagtgacattcttgagatatttggagatattgttattacccatcta 831
Query: 283 atgt---catatttataagtccctcgaacctcagttaatgattatgtacgttatcagctt 339
|||| | | | |||||||||||| |||||||||||||||| || | |
Sbjct: 830 atgtgaggaaa---aaaagtccctcgaaggtcagttaatgattatg------at-a---t 784
Query: 340 aaaggtatgctgtt-ggtgttgag-tgataggggaatgacagtccaggggcttcatttct 397
||||||||||| || ||||||| | ||||||||||||||||| |||||||||||||||||
Sbjct: 783 aaaggtatgct-ttcggtgttg-gctgataggggaatgacagcccaggggcttcatttct 726
Query: 398 ggatcattatttcttggcctgtaacctcagaaagcaatttgggttcaaaatcatctatat 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ggatcattatttcttggcctgtaacctcagaaagcaatttgggttcaaaatcatctatat 666
Query: 458 tgtgaggccaaaagctttgaactgtt---agtctgtgggaaggttctgattcccattctg 514
|||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||
Sbjct: 665 tgtgaggccaaaagctttgaactgtttacagtctgtgggaacgttctgattccaattctg 606
Query: 515 ccacgaaggatatttatttccagggtaagatacactgtgtcatatttcttagtgatattt 574
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 605 ccacgaaggatatttatttccaggataagatacactgtgtcatatttcttagtgatattt 546
Query: 575 ttaaacatttttttaaaaaaattagatattttctttatttacatttcaaatgttatttcc 634
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 ttaaacatctttttaaaaaaattagatattttctttatttacatttcaaatgttatttcc 486
Query: 635 tttccaggtttcacctctgaaaaccctcatccc 667
|||||||||||||||||||||||||||||||||
Sbjct: 485 tttccaggtttcacctctgaaaaccctcatccc 453
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1070
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1060
Effective search space: 696420
Effective search space used: 696420
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
