BAC Information

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BAC

Clone NameMSMg01-268H05
Chromosome4 (Build37)
Map Location 34,917,818 - 34,918,117
singlet/doubletsinglet
Overlap geneMobkl2b
Upstream geneLOC100041919, LOC100041924, Cnr1, Spaca1, LOC100039220, LOC665361, LOC665367, 2700059D21Rik, Orc3l, Rars2, Slc35a1, 1700003M02Rik, Gm136, 1810030N24Rik, Zfp292, Cga
Downstream geneIfnk, 3110043O21Rik, LOC620559, LOC621227, Lingo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268H05.T7 (MSMg01no268_h05.b1)MSMg01-268H05.TJ (MSMg01no268_h05.g1)
ACCAG408872AG408873
length726724
length of high quality
(start - end)
313 (46 - 358)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no268_h05.b1 PHD_FILE: MSMg01no268_h05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:44 2005CHROMAT_FILE: MSMg01no268_h05.g1 PHD_FILE: MSMg01no268_h05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTTTTTGTTTGTTTGTTTGTTTGTTTGTTTTGTTTTTGTTTTTC
GAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTTCTGAAACTCACTCTGTA
AACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGT
GCTGAGATTAAAGACGTACGCCACTACTGCCCGGCACTTAGAATTCTTGA
AAAGATTTCTAAGACTGAAAACAATTATAGAGGGGATTGAATTGGTAGAA
CATGGGTGTTTTCTTGAAAATGTGCATATACATAAGCACACATATACATA
TATCACACTATTTATCTTTCCCCNACCCANACCCACGNTNATCTTTTAGT
AATAAAGCTCCAGATCTTTACCAAACAAAAAAGAAAGAAGACCTTTGTTG
CTGTTTTGCTCGTATAATTTTATATATAAAAAATTTTAAAACCTTACACA
ATTTTTTTGAAATTAATACATATTTTAATTGTTTCACAATAAACTATGCA
TCCGGTAATGTTTAGCATCTTAACTACTTTCAAGCGTCTAGCTCAGCGTA
ATTAACTACGTTCTCTGTTCACACTCATTGTTATATATCCATCATACCCT
GCTTCTTTATCTTGTTTTACAATCATAAAGTTGTTTTGTGTGCCTGTGTG
ACTTTGTAAACGTATCCGTCCCACCC
TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGAGAAGAAATGATGACAACGAG
AACCATGGTGGGGTCCTGGCCTGTGCTGCCACTGGGGGCCACATCTGGGT
CCGTGACCCTGCAGCAGCAGGAGTCTGTTACCATCAAAGGCTACACAGAT
GTCCCTGGTCTGGGCTGCCCTTAGGGGACCTGTTGACATCTGAGGGTTGT
GCAGAACTGGCCCTACCCATCTCCTGGGCATGGAGGGACAGCTGGCCCTG
GGGGCATGAGATCAGGAGAGCCGGCTTCACCATCAGTCAGCTGCAGTTCT
TGAGAGACTGTTCTATTTCATTGCCCCCCCCCACAGTAGAGCAGGCCTGC
CACCCATCTCCCTACAGTGACATAAGCAAGGAATTACTCCCCACTCATCC
CTTGCCACCTGTGCATTAGAGAGACCTGGCCATGGGGTCATGTGAGCATG
AGAGCTGTCCCTGTCCTTCACCAGCTCTAACACTCAGGAGAGCAGTGGGC
CCTGCACCTTGCCTGAGCAGCTAGGTAGAGCTGACCCTGATGGTCGGGGC
CAGAGGGCAGGAATAGGGGAGAGCTGGCCCTAGAAGTTGTCTGCTGTGCT
GTGACATTGGTGAGGAGGAGATGCCGTCCCCTAACCTTGCGCCTTGCCAC
CGATGGCAGCCAGGAGGGCTGGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_h05.b1 MSMg01no268_h05.b1 CHROMAT_FILE:
MSMg01no268_h05.b1 PHD_FILE: MSMg01no268_h05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:44 2005
         (313 letters)



>mm_chr4_34917428_34918140
          Length = 713

 Score =  493 bits (255), Expect = e-144
 Identities = 290/303 (95%), Gaps = 3/303 (0%)
 Strand = Plus / Minus

                                                                       
Query: 11  tttttttgtttgtttgtttgtttgtttgttttgtttttgtttttcgagacagggtttctc 70
           |||||||||||||||||   |||||||| |||| ||| |||||| |||||||||||||||
Sbjct: 690 tttttttgtttgtttgt---tttgtttggtttgatttggttttttgagacagggtttctc 634

                                                                       
Query: 71  tgtgtagccctggctgttctgaaactcactctgtaaaccaggctggcctcgaactcagaa 130
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 633 tgtgtagccctggctgttctgaaactcactctgtagaccaggctggcctcgaactcagaa 574

                                                                       
Query: 131 atccgcctgcctctgcctcccaagtgctgagattaaagacgtacgccactactgcccggc 190
           |||| |||||||||||||||||||||||| |||||||| | |||||||||||||||||||
Sbjct: 573 atccacctgcctctgcctcccaagtgctgggattaaaggcatacgccactactgcccggc 514

                                                                       
Query: 191 acttagaattcttgaaaagatttctaagactgaaaacaattatagaggggattgaattgg 250
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 513 acttagaattcttgaaaagatttctaagactgaaaacaattataaaggggattgaattgg 454

                                                                       
Query: 251 tagaacatgggtgttttcttgaaaatgtgcatatacataagcacacatatacatatatca 310
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tagaacatgggtgttttcttgaaaatgtgcatatacataagcacacatatacatatatca 394

              
Query: 311 cac 313
           |||
Sbjct: 393 cac 391


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)