BAC Information

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BAC

Clone NameMSMg01-268L22
Chromosome4 (Build37)
Map Location 25,740,782 - 25,741,102
singlet/doubletsinglet
Overlap genenone
Upstream geneKlhl32, 1110007M04Rik, C230012O17Rik, Gpr63, Fhl5, 1810074P20Rik, Prdx6-rs2, LOC665019, LOC625732, Fut9, LOC100040780
Downstream geneHn1-ps1, Manea, Bhmt-ps1, LOC665079, Gng2-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268L22.T7 (MSMg01no268_l22.b1)MSMg01-268L22.TJ (MSMg01no268_l22.g1)
ACCAG409070AG409071
length738734
length of high quality
(start - end)
325 (46 - 370)293 (75 - 367)
definitionCHROMAT_FILE: MSMg01no268_l22.b1 PHD_FILE: MSMg01no268_l22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:05 2005CHROMAT_FILE: MSMg01no268_l22.g1 PHD_FILE: MSMg01no268_l22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTTGAGGCATGAGAGTCAACCCTGAATTCTGGGCTTCATGTGTA
TAAACATTCCCCTGCCACCACACACACACCCCTCCACAGATACACAAATT
TGCCTAAGATAGTATTTATTGAGTCTAAACATTTTAACATTTATACACCT
AGTATCACAATTTTAGCAGTTTTTTTCTTTCATTCTTAATATTTACTAAT
GTTCTACCATATGATTGTGCAATCTAGATTCTTTATTTAGATTAATGTCC
TGGCTTAAATTTTCATATAAAATATTGTTTTTATAATGAGCTCACATCAT
TCTCAGTTTAGATCTATCTTTCTAAAATACCTGCCTCTGTTATGCAAACT
GATTCATTCTTCATGCTCTAGACAAATTTGATAAGTTGCACACACTTAGT
TTCCAACATTTGGTTGTAGCAATTTCACCTTGACTGATTGCGTTGTGTCA
CATGCAGCTTTTGTATACTTCATTTCCTCTTTAAAGAATTTTTCTGCTAC
ATTTACTCCGTTTTCTTCCCCATAGTTGAGATCTGCTTTTACATTTTTCC
TTCCTGCTATTGTCTGTCTCATTGTCTCAACCTCTTTGTTTCTTCCCAGG
CATATTCATTTAAATATATTTTGCTCTGCAAAGTATGAATGACACACAAA
TGCACCTTCCGTTGCTCCCTGTGTTTTCACTTGCTATT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAAGAATACCGAATGGCAGA
GAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAA
TCAAAACAACACTGAGATTCCACTTCACTCCAGTCAGAATGGCTAAGATC
AAAAACTCAGGTGACAGCTAATGCTGGCGAGGATGTGGAGAAAGGAGAAC
ACTCCTCCGTTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAAT
CCGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCC
GCAATACCTCTCCTGTTTTTATATCCCCACCACGCCCCAACTGGTAAGAA
GAACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAA
GCTGTAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATG
TGGTACATTTACACAATGGAATACTACTCAGCTATTAAAAAAATGAATTT
ATGAAATTCCTAGACAAATGGATGGACCTGGAGGGTATCATCTTGAGTGA
AGTAACCCAATCACAAAGGAACTCGCACAATATGTACTCACTGATAAGTG
GATATTAGCCCAGAAACTTAGGATACCCAAGATATAAGATACAACTTGCC
AAACGCATGAAATTTCAGAAGAACGAAGACCAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_l22.b1 MSMg01no268_l22.b1 CHROMAT_FILE:
MSMg01no268_l22.b1 PHD_FILE: MSMg01no268_l22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:05 2005
         (325 letters)



>mm_chr4_25740579_25741306
          Length = 728

 Score =  507 bits (262), Expect = e-148
 Identities = 306/322 (95%), Gaps = 5/322 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctcttgaggcatgagagtcaaccctgaattctgggcttcatgtgtataaacatt 63
           ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 204 ggaattctcttgaggcatgagagtcaaccttaaattctgggcttcatgtgtataaacatt 263

                                                                       
Query: 64  cccctgccaccacacacac-acccctccacagatacacaaatttgcctaagatagtattt 122
           ||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cccctgccaccacacac-ctatccctccacagatacacaaatttgcctaagatagtattt 322

                                                                       
Query: 123 attgagtctaaacattttaacatttatacacctagtatcacaattttagcagtttttttc 182
           |||||||||||||||||||||||||||||||| ||| ||| |||||||| ||||||||||
Sbjct: 323 attgagtctaaacattttaacatttatacacccagtgtcagaattttagtagtttttttc 382

                                                                       
Query: 183 tttcattcttaatatttactaatgttctaccatatgattgtgcaatctagattctttatt 242
           |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 383 tttcattcttaatatttactaatgttttaccatatgattgtgcaatccagattctttatt 442

                                                                       
Query: 243 tagattaatgtcctggcttaaattttcatataaaatattgtt---tttataatgagctca 299
           ||||||||||||||||||||||||||||||||||||||| ||   |||||||||||||||
Sbjct: 443 tagattaatgtcctggcttaaattttcatataaaatatttttatttttataatgagctca 502

                                 
Query: 300 catcattctcagtttagatcta 321
           ||||||| ||||||||||||||
Sbjct: 503 catcattttcagtttagatcta 524


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 728
Length adjustment: 9
Effective length of query: 316
Effective length of database: 719
Effective search space:   227204
Effective search space used:   227204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)