BAC Information

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BAC

Clone NameMSMg01-269C17
Chromosome4 (Build37)
Map Location 132,668,871 - 132,669,185
singlet/doubletsinglet
Overlap genenone
Upstream geneOprd1, LOC664894, Ythdf2, LOC664903, Gmeb1, Rnu11, Taf12, 9530096D07Rik, LOC100039864, Trspap1, Rcc1, Snhg3, Phactr4, Med18, Sesn2, Atpif1, Dnajc8, Ptafr, Eya3, Xkr8, Smpdl3b, Rpa2, BC013712, LOC100039917, Ppp1r8, Stx12, OTTMUSG00000010099, BC008163, Fgr, Ahdc1, LOC100041932
Downstream geneWasf2, Gpr3, Cd164l2, Fcnc-ps, Map3k6, Sytl1, D4Ertd196e, LOC100041990, LOC100042018, Wdtc1, Slc9a1, 4732473B16Rik, 2300002D11Rik, 1810019J16Rik, Nudc, Nr0b2, Gpatch3, Atpbd1b, Sfn, Zdhhc18, LOC545683, Pigv, Arid1a, Rps6ka1, 4930429E23Rik, LOC100042151, Hmgn2, Dhdds, Lin28, Aim1l, Cd52, Ubxd5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-269C17.T7 (MSMg01no269_c17.b1)MSMg01-269C17.TJ (MSMg01no269_c17.g1)
ACCAG409370AG409371
length739737
length of high quality
(start - end)		321 (42 - 362)288 (70 - 357)
definitionCHROMAT_FILE: MSMg01no269_c17.b1 PHD_FILE: MSMg01no269_c17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:34 2005CHROMAT_FILE: MSMg01no269_c17.g1 PHD_FILE: MSMg01no269_c17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCAGGACAGTCACGGCCCTGTCTCAAAACAACACCAACCACCACCAACAA
CAAATAACAAGAAGTGTCCGACTGAGTTCCAGGCCACCTGGTCTACACTA
GCAAGTTCCAGGCCAGCCAGGGCTATGTAGTGAATCCCTGGTCTCAAAAC
AAACAAACAAACAAAAAAACAAAAAAACAACAACAAACAAACAAAAACAG
ATGAAGCAAAGAGCAGACCACCCTGGGCACTGTGACTGTGTAGGAGATGA
TGTTTCATCCTGAGGGTAGTGGGTCATAAGAAAGGGGATTAAGGCAGGGG
TGGGGGAGGGTTTTTTTTTGGCTCCCCCACTCACAGTTACCTTCTCTGCT
ATGCTCCAGACAGCAAGATATTGCCTAACAACTAAGGACTCAATGCAAAA
GGAATCAAAGGAAAAACGGGCTCCCTTGCTCAGCAGAGACAGGGCAAGGC
TTGGATTCTACCCCTTTGCAACCAAGATGCAGTTTTACAACTTGAAAAGT
CACTTAATCCAGGTGCCAGGATGAGGTGGGGCACTGCAGGTGGGGCCTGG
CGGTGAGGNCTGTCCTGCAGGGTACCAGGAGCTGCAGTCTGCCAGCTGCT
ACCCATGTCACAACTCCTCCTCCCGCTCCCATGGATGTGCTCAGCACCTG
GGAACCCCCTCCTTTTTCCAGTCTTCCCCTCAGGGAAGG

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACTCTGTAGACCAGGCTGGCCTCAAACTCAG
ATCTGTCTGCCTCTGCTGGGATTAAAGGAATGCACCACTGCCATCTCCCT
CTTGGCTACCTTTTTTTTTTTTTTTTTTTTTTGGCTTTAGCAATTGGGGT
AGAGAGGTGGCTCATCATTTAAGAGCACTTCCTGCAGGTTCCCTGCGTCC
TCCCTGGGCAGCTCAGAAACCCAGACTCCAGCTCCAGGGAATCTGATGCC
ATCTTCTGGGTTTCACATACATCTGCCCAACTGTCCAACAGAGTGAGACA
GGTAGAAAATTTTTTTAAAACGCCCCGCCCACTTGAGTTCTGTTCTGAGG
TTTTAGATGTAACATCCAAAGTAAGGTGTCAATGGATACCGTCGGTAGTA
AGACTTCATCCAACTTAAAAACTTGGGCTCGGCAAAGGGCACTGTTAGTG
AATGAAGACTCAAACCAGAGATTATGAGGAAATAGTGCCAAAACACTAGG
GAAAGGATTTGAGTCTGAAATACGCAGGTCCTACATTTTGAGACAGGGTC
TCTCATAGCCTAGGCTGGCTTTGAACTCCCTGATCTTTGCCTTGACCTCC
CAAGTACTGGGATTACAGGTATATACCACTGAGCCCAACTTGCTATTTTT
GTTTTATCTCTTGAGAAGGTCTCACTGTAGCCCAGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no269_c17.b1 MSMg01no269_c17.b1 CHROMAT_FILE:
MSMg01no269_c17.b1 PHD_FILE: MSMg01no269_c17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:34 2005
         (321 letters)



>mm_chr4_132668667_132669387
          Length = 721

 Score =  586 bits (303), Expect = e-172
 Identities = 312/315 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaggacagtcacggccctgtctcaaaacaacaccaaccaccaccaacaacaaat 64
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaggacagccagggccctgtctcaaaacaacaccaaccaccaccaacaacaaat 264

                                                                       
Query: 65  aacaagaagtgtccgactgagttccaggccacctggtctacactagcaagttccaggcca 124
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aacaagaagtgtccgagtgagttccaggccacctggtctacactagcaagttccaggcca 324

                                                                       
Query: 125 gccagggctatgtagtgaatccctggtctcaaaacaaacaaacaaacaaaaaaacaaaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gccagggctatgtagtgaatccctggtctcaaaacaaacaaacaaacaaaaaaacaaaaa 384

                                                                       
Query: 185 aacaacaacaaacaaacaaaaacagatgaagcaaagagcagaccaccctgggcactgtga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aacaacaacaaacaaacaaaaacagatgaagcaaagagcagaccaccctgggcactgtga 444

                                                                       
Query: 245 ctgtgtaggagatgatgtttcatcctgagggtagtgggtcataagaaaggggattaaggc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctgtgtaggagatgatgtttcatcctgagggtagtgggtcataagaaaggggattaaggc 504

                          
Query: 305 aggggtgggggaggg 319
           |||||||||||||||
Sbjct: 505 aggggtgggggaggg 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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