BAC Information

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BAC

Clone NameMSMg01-269J06
Chromosome4 (Build37)
Map Location 46,742,882 - 46,842,398
singlet/doubletdoublet
Overlap geneGabbr2
Upstream geneLOC100040567, LOC100040580, Aldh1b1, Igfbpl1, 1300002K09Rik, Tdrd7, Tmod1, BC057893, AU014645, Xpa, LOC624430, LOC666379, LOC666389, Foxe1, 5830415F09Rik, Hemgn, LOC100040643, Anp32b, Nans, Trim14, Coro2a, Tbc1d2
Downstream geneAnks6, LOC435781, Galnt12, Col15a1, Tgfbr1, LOC666236, LOC666473, Alg2, Sec61b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-269J06.T7 (MSMg01no269_j06.b1)MSMg01-269J06.TJ (MSMg01no269_j06.g1)
ACCAG409656AG409657
length732737
length of high quality
(start - end)		250 (71 - 320)599 (72 - 670)
definitionCHROMAT_FILE: MSMg01no269_j06.b1 PHD_FILE: MSMg01no269_j06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:04 2005CHROMAT_FILE: MSMg01no269_j06.g1 PHD_FILE: MSMg01no269_j06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,742,882 - 46,743,131)(46,841,800 - 46,842,398)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAGCAGCAGCTCTCCGAGAGTGTATATGCATGCACATGGGTGTGGATTCT
AATGGCCTCCCAGAGCAGAGGCCTGGTTCCTCAGGGTGGCCCAACACTGG
GGAACCAATGTTGGGTGGCCCAATGTTGATGTGGCTTCATGCTGAGGTGC
TGTCATAGTCAGCCATGTGTGAGGAAATAGGACAGAGTGACACTGTAAAC
CATTGAGCTGTTCACGATGGTGGCTGACTTCGGTGCCTACTTCATGTCCT
GGCTTTGAGGGTGTTGCAGATCTGTTTTTCAGGTTGTAACCAGCATGGTA
GGAATAAAGATATTCTAAAGATCCAGCCATGTCCGCTAATCTGACTATCA
AACTATTGAAACAATGGACCCCAAGAAATGAGAATAACCCAGGAATCTCA
TTCTGGGAGAAGGAAAAGTTCTTAGCCAGAGGACGTGCATGTGTGCGTGC
CTGCTGGACAGAGTCCTAAGAACTCAGACCTCCACGCAGAATGAGGCAGT
TGTGGGTCAGTGGTGGGATGAGCTGCGCTTTGATTTGGACCGCTCAGATG
TACCACTCTCTTGGTTTTTTCAATACTAAGTTTCTCTGTGTAGTCCTAGC
TTGCCTGGAACTTGCTTTTGTTATCGTCCGTTCTCCTACTCACATCGATC
TCCCTGTCTCCTACTCCCCAATGCTGGCATTN

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAGATGTCCCAAAGCCACAGAAACTATCC
GCAGCTGGCAACACCCCCACTCTGCTACAGCACGAGGCAAATCATAGTCA
GTTGCTGAAGACAGTCTGAAGCAGCCCCATATCCGCACACCTGAGGTTAA
AATGAAACCACATTCTTATATGTCAGTGTTTTTAAGAAACCAAATTCCAG
AATTCACACTTACACCGCCCCCTTGGGAGCCCCTAGTTCCAGAATGAGTC
TCTGTTGTTCCTCTCTGCTGCTCTTCTCACTCTGGCATCCCAACCTCCAC
CCTCACTGATGTCCAGGAGACGTTACCTCCCAGAGATCTCAGGTTATCTT
GCACACAGCTGTCAGTGCTCTGTAACTAAGGTTTGCTTCTGGCTGCCTCT
AATGTGTCTTTAACTCTCAGATTCAGTAATTTAATTCATCTCCTGCCGTC
ATTTTCTCAGCTCTGCTGGGGTCCTTTGAATTTCAGTTTCTTTCACTGTA
TCATTTCCAGCATTTTAGAGTTCTGGTTTGCTTTCATCTGTGAAGCACAG
AACTGATGTGACAGTTTCCTTTTACTTCCGGTAGCAAATCTGTTCGTTGA
TGAAGCCCTTCCTCTGCTCATGTTCACTGTCTGTTTTTTACGGCTCATGG
CTTCCGAATCCTCCCTGAACTGGGACAGTCTGGCATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no269_j06.b1 MSMg01no269_j06.b1 CHROMAT_FILE:
MSMg01no269_j06.b1 PHD_FILE: MSMg01no269_j06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:04 2005
         (250 letters)



>mm_chr4_46742682_46743331
          Length = 650

 Score =  453 bits (234), Expect = e-132
 Identities = 246/250 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtatatgcatgcacatgggtgtggattctaatggcctcccagagcagaggcctggttcc 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtatatgcatgcgcatgggtgtggattctaatggcctcccagagcagaggcctggttcc 260

                                                                       
Query: 61  tcagggtggcccaacactggggaaccaatgttgggtggcccaatgttgatgtggcttcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcagggtggcccaacactggggaaccaatgttgggtggcccaatgttgatgtggcttcat 320

                                                                       
Query: 121 gctgaggtgctgtcatagtcagccatgtgtgaggaaataggacagagtgacactgtaaac 180
           ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 gctgaggtgctatcatagtcagccatgtgtgaggaaacaggacagagtgacactgtaaac 380

                                                                       
Query: 181 cattgagctgttcacgatggtggctgacttcggtgcctacttcatgtcctggctttgagg 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cattgagctattcacgatggtggctgacttcggtgcctacttcatgtcctggctttgagg 440

                     
Query: 241 gtgttgcaga 250
           ||||||||||
Sbjct: 441 gtgttgcaga 450


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no269_j06.g1 MSMg01no269_j06.g1 CHROMAT_FILE:
MSMg01no269_j06.g1 PHD_FILE: MSMg01no269_j06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:04 2005
         (599 letters)



>mm_chr4_46841411_46842409
          Length = 999

 Score = 1135 bits (587), Expect = 0.0
 Identities = 596/599 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagatgtcccaaagccacagaaactatccgcagctggcaacacccccactctgctacagc 60
           |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 988 cagatgtcccaaagccgcagaaactatccgcagctggcaacacccccactatgctacagc 929

                                                                       
Query: 61  acgaggcaaatcatagtcagttgctgaagacagtctgaagcagccccatatccgcacacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928 acgaggcaaatcatagtcagttgctgaagacagtctgaagcagccccatatccgcacacc 869

                                                                       
Query: 121 tgaggttaaaatgaaaccacattcttatatgtcagtgtttttaagaaaccaaattccaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 tgaggttaaaatgaaaccacattcttatatgtcagtgtttttaagaaaccaaattccaga 809

                                                                       
Query: 181 attcacacttacaccgcccccttgggagcccctagttccagaatgagtctctgttgttcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 attcacacttacaccgcccccttgggagcccctagttccagaatgagtctctgttgttcc 749

                                                                       
Query: 241 tctctgctgctcttctcactctggcatcccaacctccaccctcactgatgtccaggagac 300
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 748 tctctgctgctcttctcactctggcatcccaatctccaccctcactgatgtccaggagac 689

                                                                       
Query: 301 gttacctcccagagatctcaggttatcttgcacacagctgtcagtgctctgtaactaagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 gttacctcccagagatctcaggttatcttgcacacagctgtcagtgctctgtaactaagg 629

                                                                       
Query: 361 tttgcttctggctgcctctaatgtgtctttaactctcagattcagtaatttaattcatct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 tttgcttctggctgcctctaatgtgtctttaactctcagattcagtaatttaattcatct 569

                                                                       
Query: 421 cctgccgtcattttctcagctctgctggggtcctttgaatttcagtttctttcactgtat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 cctgccgtcattttctcagctctgctggggtcctttgaatttcagtttctttcactgtat 509

                                                                       
Query: 481 catttccagcattttagagttctggtttgctttcatctgtgaagcacagaactgatgtga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 catttccagcattttagagttctggtttgctttcatctgtgaagcacagaactgatgtga 449

                                                                      
Query: 541 cagtttccttttacttccggtagcaaatctgttcgttgatgaagcccttcctctgctca 599
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 cagtttccttttacttccggtagcaaatctgttcgttgatgaagcccttcctctgctca 390


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space:   582521
Effective search space used:   582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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