BAC Information

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BAC

Clone NameMSMg01-269J22
Chromosome4 (Build37)
Map Location 142,998,035 - 142,998,359
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC546484, 6330411D24Rik, Prdm2, LOC666018, EG626575, LOC433776, Pdpn, Lrrc38, LOC621961, Pramel1
Downstream gene4732496O08Rik, Oog4, LOC666015, LOC626700, OTTMUSG00000010207, LOC100040854, LOC100040861, BC080695, LOC666049, LOC279185, LOC277668, LOC100040924, OTTMUSG00000010333, LOC277666, OTTMUSG00000010009, OTTMUSG00000010328, OTTMUSG00000010433, LOC195555, LOC194224, LOC626889, LOC329984, LOC626922, LOC626943, LOC100041127, LOC436146, Pramel4, LOC100041077, LOC100041144, Oog3, Oog2, C87977, Pramel5, LOC666150, LOC626995, OTTMUSG00000010537, EG627009, Pramef12, D530049N12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-269J22.T7 (MSMg01no269_j22.b1)MSMg01-269J22.TJ (MSMg01no269_j22.g1)
ACCAG409688AG409689
length732738
length of high quality
(start - end)		329 (41 - 369)293 (72 - 364)
definitionCHROMAT_FILE: MSMg01no269_j22.b1 PHD_FILE: MSMg01no269_j22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:07 2005CHROMAT_FILE: MSMg01no269_j22.g1 PHD_FILE: MSMg01no269_j22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TACATAATAAATTAAACCTACAAATTAACAAACAGAAAACATTGTGATGA
ATCAAAGGTTTGTTGGGAGCCAAAACCAACCCGTGTATGAAAAGAACCAG
GAGCCAGTTTTCTTTGCCATCTTGGGCCTATGTCCCCAGTGGCTATGGTC
TAGCCCAGGTGAGATGGGGTGTCCCAATAGAGGTCCAGATCTGGACAATA
AAGACTGGTTCCCAATCAGGCAGGAATAGGCTCCCAGACTTCCAAGTCTC
TTCAATGCTATCCACCCCTTAGCTGCCTCAGCTTCTAAACACAAGCGGTC
ATCAGATTGAATGTTTGAGTTTCCACCCACATACTTGTTGGTGATAATGG
GGTAGGGGTGGATACCCCCCNCNGNAAAAAATTACTGCTGAACTGGGGTG
CAGTTGTCAGGGTCCAGGAAGGCTGGAATGTTGATCAAGAGGCTGGGCGG
CTAGGGAGTCAGGCTTTCTTGAGAAGCCAGACAATAATACTATTTGGAAG
TTTGGCTGCGTCTAAACGACCTTCTTTTTTTTGAATTAAAGATTTTGTAC
TGTCACTACGTCGAATTCCTTGTACCTTTTTAGAATTATTCCTCATTCCA
AAATCTTCCTCCTTTTTGTTCTCTCCCTCCTACTCTATTTCCTGCCATTT
TCTTACCTGTATATTTTTCCCCATCACCTTTG

GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACTTGATATGCACTCTCTGATAAGTGGAT
ATTAGCCCAGAAACCTCGAATACCCATGATACATCTTCGAAAACACAAGA
AAATCAAGAAGGATGACTAACTCATGGATACTTCATTCCTCCCTAGAATA
GAAAATAAAATATCCATGGAAGGAGTTACAGAGACGAACTTTATAGCTAA
GACAAAAGGATGGACCACGCAGAGACTGACCCACCCGGGGGTCCATCCCA
TAATCAGCCACCAAAAGCAGACACTATTGCATACACCAGCAAGATTTTGC
TGAAAGGACCCTGATATATTTGTCTCCCGCGCAGGCTTTGCCATTGCCTG
GCAAATACATGACATGATGCTCACAGTCATGTATAGGATGGAACAGAGGG
CCCCCAATGTAGGAGCTAGAGAAAGTATCCTAGAGCTGAAGGAGTCTGCA
AACCTATAGGTGGAACAACAATATGAAATAACCAGTACTCCCAGAGCTTG
TGTCTCTAGCTGCATATGTAGCAGAAGATGGCCTAGTCAGCCATCATTGG
GAAGAGAGGCCCCTTGGTCTTGCAAACTTTATATGCCCCAGTACAGGGGA
AAGCCAGGGCCAAGAAATAGGAGTGAGTGCGTAGGGGAGCAGGGCAGGGG
GAGGGTATAGGGGACTTTTGGAATAGCATTTNAAATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no269_j22.b1 MSMg01no269_j22.b1 CHROMAT_FILE:
MSMg01no269_j22.b1 PHD_FILE: MSMg01no269_j22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:07 2005
         (329 letters)



>mm_chr4_142997831_142998559
          Length = 729

 Score =  613 bits (317), Expect = e-180
 Identities = 323/325 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctacataataaattaaacctacaaattaacaaacagaaaacattgtgatgaatca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctacataataaattaaacctacaaattaacaaacagaaaacattgtgatgaatca 264

                                                                       
Query: 65  aaggtttgttgggagccaaaaccaacccgtgtatgaaaagaaccaggagccagttttctt 124
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 265 aaggtttgttgggagccaaaaccaacctgtgtatgaaaagaaccaggagccagttttctt 324

                                                                       
Query: 125 tgccatcttgggcctatgtccccagtggctatggtctagcccaggtgagatggggtgtcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgccatcttgggcctatgtccccagtggctatggtctagcccaggtgagatggggtgtcc 384

                                                                       
Query: 185 caatagaggtccagatctggacaataaagactggttcccaatcaggcaggaataggctcc 244
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caatggaggtccagatctggacaataaagactggttcccaatcaggcaggaataggctcc 444

                                                                       
Query: 245 cagacttccaagtctcttcaatgctatccaccccttagctgcctcagcttctaaacacaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cagacttccaagtctcttcaatgctatccaccccttagctgcctcagcttctaaacacaa 504

                                    
Query: 305 gcggtcatcagattgaatgtttgag 329
           |||||||||||||||||||||||||
Sbjct: 505 gcggtcatcagattgaatgtttgag 529


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space:   230400
Effective search space used:   230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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