BAC Information

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BAC

Clone NameMSMg01-269L14
Chromosome4 (Build37)
Map Location 115,314,911 - 115,315,551
singlet/doubletsinglet
Overlap geneCyp4b1
Upstream geneFoxd2, LOC100040736, Foxe3, Cmpk, Stil, Tal1, Pdzk1ip1, Cyp4x1, Cyp4a21-ps, LOC384042, LOC230639, Cyp4a12, LOC546842, Cyp4a12b, LOC435802, LOC666393, LOC230641, Cyp4a14, Cyp4a10, LOC666168, LOC631037, LOC100040843
Downstream geneLOC546843, 4732418C07Rik, 4930544O15Rik, Atpaf1, Mobkl2c, Mknk1, Kncn, 6430628N08Rik, Dmbx1, Faah, Nsun4, Uqcrh, Lrrc41, Rad54l, 1520402A15Rik, Pomgnt1, Tspan1, 1700042G07Rik, LOC433748, Pik3r3, Mast2, LOC631400, Ipp, Tmem69, Gpbp1l1, LOC622665, Nasp, Akr1a4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-269L14.T7 (MSMg01no269_l14.b1)MSMg01-269L14.TJ (MSMg01no269_l14.g1)
ACCAG409764AG409765
length719724
length of high quality
(start - end)		645 (44 - 688)644 (75 - 718)
definitionCHROMAT_FILE: MSMg01no269_l14.b1 PHD_FILE: MSMg01no269_l14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:14 2005CHROMAT_FILE: MSMg01no269_l14.g1 PHD_FILE: MSMg01no269_l14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:15 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCACCCAAAAGGTTGCATTATGTGTGCAATGGCAAGGAGCAAAAATGA
TAAAAAATCATCTTTACCTATAGATAAAAGGAACACTTGTGGCACCTTCC
TCCTTTCTGGCTGGCATCCCTGAACTTCTCCCTCCTGCCCTGTCTCTCTT
CTTTTCTGCATGCACTTGAAGTGACCAAGGTAACACCATCTTGTTCTGAC
TTCATTTTGTATTTACTTAGATAATTCTCAACACTCTTCCCTCCCAATAG
CCATGTGTGTCTTGGCAACACATTTCTGTGACTCCAAACATGACCCAGAT
GTATTAACCAAAATAATTGTCACGCCATGTCTAAATAACTAAATAATATT
ACAAGCTTACTCTGACCCTTACCTAGCATTGACGTAATTGTGGGTTTTGT
CTTTAGAAGTGCTGTACCCCTGAATTTTGGCACCAAGAAGCTCTGAAGCA
TTAACCTAATATTGGTTGCCACTCAAAGTAAAGAACTCTGATACTCTTAA
TTGGATTAATTACTCTTAATTAATTACTTAATTTGATTAAATCTTCTTAG
TTGGATACTCTTGAATGGGTTGTTCCGCAGCTTGGGGTTCCTTACATTCT
GCTCCTGTCTTTCCCAGCTCCAGGCAGCATTCCTGTGCCCTTCTGTAGCA
TCCTAACCATAGACATGAN

AATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGA
GAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGTGAGGATGTGGAGAAAGAGGAAC
ACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAAT
CCCTCTGGCGGTTCCTCAGAAAATTGGACATAATACTACCGGAGGATCCA
GCAATACCTCTCCTGTTGTTATATCCACAACATGCCTCAACTGGTAAGAA
GGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAA
GCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATAGATACAGAAAATG
TGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATT
TATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTG
AGGTTACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGT
GGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTCCT
AAACACATGAAACTCAAGAAAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no269_l14.b1 MSMg01no269_l14.b1 CHROMAT_FILE:
MSMg01no269_l14.b1 PHD_FILE: MSMg01no269_l14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:14 2005
         (645 letters)



>mm_chr4_115314707_115315751
          Length = 1045

 Score = 1185 bits (613), Expect = 0.0
 Identities = 634/641 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccacccaaaaggttgcattatgtgtgcaatggcaaggagcaaaaatgataaaaaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccacccaaaaggttgcattatgtgtgcaatggcaaggagcaaaaatgataaaaaa 264

                                                                       
Query: 65  tcatctttacctatagataaaaggaacacttgtggcaccttcctcctttctggctggcat 124
           |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 265 tcatctttacctatagataaaaggaacactcgtggcaccttccttctttctggctggcat 324

                                                                       
Query: 125 ccctgaacttctccctcctgccctgtctctcttcttttctgcatgcacttgaagtgacca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccctgaacttctccctcctgccctgtctctcttcttttctgcatgcacttgaagtgacca 384

                                                                       
Query: 185 aggtaacaccatcttgttctgacttcattttgtatttacttagataattctcaacactct 244
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 385 aggtaacaccatcttgttctgacttcattttgtatctacttagataattctcaacactct 444

                                                                       
Query: 245 tccctcccaatagccatgtgtgtcttggcaacacatttctgtgactccaaacatgaccca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tccctcccaatagccatgtgtgtcttggcaacacatttctgtgactccaaacatgaccca 504

                                                                       
Query: 305 gatgtattaaccaaaataattgtcacgccatgtctaaataactaaataatattacaagct 364
           |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||
Sbjct: 505 gatgtattaaccaaaataattgtcacgttatgtctaaataactaaataatattacaagct 564

                                                                       
Query: 365 tactctgacccttacctagcattgacgtaattgtgggttttgtctttagaagtgctgtac 424
           |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 565 tactctgacccttagctagcattgacgtaattttgggttttgtctttagaagtgctgtac 624

                                                                       
Query: 425 ccctgaattttggcaccaagaagctctgaagcattaacctaatattggttgccactcaaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccctgaattttggcaccaagaagctctgaagcattaacctaatattggttgccactcaaa 684

                                                                       
Query: 485 gtaaagaactctgatactcttaattggattaattactcttaattaattacttaatttgat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gtaaagaactctgatactcttaattggattaattactcttaattaattacttaatttgat 744

                                                                       
Query: 545 taaatcttcttagttggatactcttgaatgggttgttccgcagcttggggttccttacat 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 taaatcttcttagttggatactcttgaatgggttgttccgcagcttggggttccttacat 804

                                                    
Query: 605 tctgctcctgtctttcccagctccaggcagcattcctgtgc 645
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tctgctcctgtctttcccagctccaggcagcattcctgtgc 845


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space:   657225
Effective search space used:   657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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