BAC Information

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BAC

Clone NameMSMg01-269O16
Chromosome4 (Build37)
Map Location 38,870,389 - 38,870,582
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC277771, LOC100039448, LOC665520
Downstream geneLOC100039487, 1700009N14Rik, LOC435775, LOC329824, LOC621880
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-269O16.T7 (MSMg01no269_o16.b1)MSMg01-269O16.TJ (MSMg01no269_o16.g1)
ACCAG409900AG409901
length719713
length of high quality
(start - end)
45 (45 - 89)194 (122 - 315)
definitionCHROMAT_FILE: MSMg01no269_o16.b1 PHD_FILE: MSMg01no269_o16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:28 2005CHROMAT_FILE: MSMg01no269_o16.g1 PHD_FILE: MSMg01no269_o16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGGTTGGCGGTTTTGTTCCTGGGAGCTCTGAAGGATCTGGTTGG
TTGATATTGATGTTCTTTCTACCGCGATTGCAAACCCCTTTGCTTACTTC
AGACCTTTTTCGAACTCCTCCATGTGAGACTCTATGCCCAGTCGAGTGGT
TATTTCACATTGCTGCAAAGAATTGCCTTTACATGCTCAATGGGTGATTG
CATTAGATCTATAGATGGATGGAACAAATGCAAATTTCACTATGGTAATC
CCATTACTAAAAGATGACTATAAATATTTCCTCTATCAGATATCTCCCAT
CCTGTCCTTTTTCTTAGTCNCAACACACCCGCCCCACTGTACATAAGATT
GATCGTTTAGAGCTCAAACCACGATAAAATATAAAATACGCTATGTTGGG
TCATGAACTCGCAAGATGAGAGCCTTAACGCGATGATGTGTTTGCGGATG
AAAGGAAACTACCTGACCCTTCTGTCAAGATGGAGGCCTGCTGTTTTGCT
CATAGTCGCAATGAGATGGAGGATGTCGTTGAGAGAGCGCTGGTGTTGAC
TTATGAACCTTATAACTGTCAATGTCATTATCAAGCGTCACACTATAGAG
CCCCCCGATCTCTGTCTCTTGTAAACTTAGAAACATATTGTAGTCTCACT
TTAAACCCTGTTCACCTTT
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTTCCGACGAAATCCAAATGGCAGCTATGGATTCATTAGCATC
ATCCTAACTTGGTCCCAAGCCTGAGACTGTTGAAGTGTGGTTACCTCCAC
GGTAAAGAGCCACTTACGGGAACCAGGTTCTGAAGACTCCAGGTTTTAAA
TGCACTGGTGAACCTTACCAAAAGGCTCAGATCTACGAGTGTAGGGAAGC
TTGTGAGAAGGGTAGTTATGGGACCAGTCTGCTCTTCCCAGTCTGTTCCC
TTCTTGTCCATATGCCTTTATGTTTTACGTACCCAGGAGTCTCTCAGCAG
GATGCTGTTCCTGGTTGTCCCCCCCCCCCAGTCATCAGAATTACAAACTT
CTTTACTTTATAAGAGCACTGCATAACAAATACTTTCGTATAGGAACATG
AGATGGACTGAGGTGGGAAAATATATTATTCAGTAATTTTTAGTTTACTA
TAAGGGACATCCAGTTCATAGAGTGTTTATAAATGGGTTTTAATCAGACC
TTATTAATAATCCTGAGATTGCTTGAAGTCAGAATGTGAAAGATAGTCTG
GATTATGCATGTGCTTTTCTCTGGACTATATATAGATTGTAAGCAGCCAG
AATATCTCTATATGTTTACAGAAAAATGGATATACCAGGAGATTTTCTGG
CATGTCTGACACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no269_o16.g1 MSMg01no269_o16.g1 CHROMAT_FILE:
MSMg01no269_o16.g1 PHD_FILE: MSMg01no269_o16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:28 2005
         (194 letters)



>mm_chr4_38870189_38870782
          Length = 594

 Score =  360 bits (186), Expect = e-104
 Identities = 192/194 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgagactgttgaagtgtggttacctccacggtaaagagccacttacgggaaccaggttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgagactgttgaagtgtggttacctccacggtaaagagccacttacgggaaccaggttct 260

                                                                       
Query: 61  gaagactccaggttttaaatgcactggtgaaccttaccaaaaggctcagatctacgagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaagactccaggttttaaatgcactggtgaaccttaccaaaaggctcagatctacgagtg 320

                                                                       
Query: 121 tagggaagcttgtgagaagggtagttatgggaccagtctgctcttcccagtctgttccct 180
           |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 tagggaagcttgtgagaaaggtagttatgggaccagtctgctcctcccagtctgttccct 380

                         
Query: 181 tcttgtccatatgc 194
           ||||||||||||||
Sbjct: 381 tcttgtccatatgc 394


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)