BAC Information

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BAC

Clone NameMSMg01-270A09
Chromosome4 (Build37)
Map Location 54,621,388 - 54,621,706
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc44a1, Fsd1l, LOC666483, Fcmd, Tal2, LOC435784, Tmem38b, LOC670124, LOC100041280, LOC666901
Downstream geneLOC100041303, LOC384018, EG666920, Zfp462, LOC670211, Rad23b, LOC666953, LOC100041348, Klf4
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-270A09.T7 (MSMg01no270_a09.b1)MSMg01-270A09.TJ (MSMg01no270_a09.g1)
ACCAG409978AG409979
length720723
length of high quality
(start - end)
325 (44 - 368)234 (124 - 357)
definitionCHROMAT_FILE: MSMg01no270_a09.b1 PHD_FILE: MSMg01no270_a09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:35 2005CHROMAT_FILE: MSMg01no270_a09.g1 PHD_FILE: MSMg01no270_a09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCAGGACAACCCAAGCTACAAAGCGAAACTCTGTCTCACAATACCAAG
AATAGTAAGAATTTATGCAAGAGCAAACTGGTCAACATTCAAGTGTGGGT
CTAAAGTGATCACTTAGATCAAATATGAGTACGATTCTCACATTAAAGAC
TCATGCAAGGTGAACTATGGACATGAAAACAAACAAACAAACAAAACAAA
ACAAAACAAAAACCCAGAAACATGATGGTTACCAATTCCACAGGAATCAT
GAAATCATATCAAGTTGTTTAGTAGTATAATAAGAGCTGTAAAAAACAAA
AACAAAAAGATATTGATTAAACTAGCTGACACACTATTGACAGCAAATGG
CCACTAAGGGAGGAAGAGTCTGTTTTCTTCAAAAGTCTGGTCTGTAGGAG
ATTGGCTATGTCCTAGACACATAAGTTATAGGCAGTAGTAGTCAGACTCA
GTAGGTTTTTTATTTTTAAGGAACATGATGTTGGGAGGTAAACATGGAAG
GATATCTAGAAAGAGTTGGTAGGGGAAGTGTGGGTGAATGCAATTGAAAT
TCATTGTATGCATGTATAANATTCTCAGAGAATAAATAAACATATTTTAT
TAAAAATTGGCATTAGGAGAAATGGCTTAGAGGCCAAGAGAGCTTGGAGC
TCTTACAGAAGACCCAGATT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATCAAAGCCAATGTGGGCTATAT
GATGGCCTCTTTTAAATATATCAAAACCAATCAAGGCATATTACTGCATG
TCTTTATTCCCAGCATTTGGGAGACAGAGGCAGGTTTATCTCTCTATGAG
TTCATGGCGAGCCTGGTTCACATAGTGAGTTCTAGGACAGCCAGAGCTAC
ATAAGTGAGACCCTCCTTTGAAAAAAAAAACTTAGCAAGAGGGGAAGATG
GAGGAAGGAAGAGAGGTAGAGAGAAGGAGAGAGGGAGAGAGGGAGAGAGA
GAGTGNNTTTTTTTTTTTTTCCCCCCCCCCCCCCCCCNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNCCCCCCCCCCNCAAAAAAAAAAANCCCCCCCNN
NCCCCCNCCCCCCCCCCCCCCCCCCNAACCCCACCAACAACCCCACCACA
CAAACAACCCCCACAAACCAAAACCCCAACACACCACCCCACCCCCCAAA
CACCCCCACCCCCAACCCCAAACCCCCNACCNAACCCAAACCACCCCCAC
CCCCACCCCCCCCCACACAACCCNACCCCAAAACCCCACCCACTACCCCC
CCACCAAAACCACCCACTCCTACCCTTTCCCTTTTTTTTTCCTCCCCATT
CCTCTCCTCCCCCCCTTTACCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no270_a09.b1 MSMg01no270_a09.b1 CHROMAT_FILE:
MSMg01no270_a09.b1 PHD_FILE: MSMg01no270_a09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:35 2005
         (325 letters)



>mm_chr4_54621184_54621908
          Length = 725

 Score =  617 bits (319), Expect = 0.0
 Identities = 319/319 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaggacaacccaagctacaaagcgaaactctgtctcacaataccaagaatagta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaggacaacccaagctacaaagcgaaactctgtctcacaataccaagaatagta 264

                                                                       
Query: 65  agaatttatgcaagagcaaactggtcaacattcaagtgtgggtctaaagtgatcacttag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agaatttatgcaagagcaaactggtcaacattcaagtgtgggtctaaagtgatcacttag 324

                                                                       
Query: 125 atcaaatatgagtacgattctcacattaaagactcatgcaaggtgaactatggacatgaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atcaaatatgagtacgattctcacattaaagactcatgcaaggtgaactatggacatgaa 384

                                                                       
Query: 185 aacaaacaaacaaacaaaacaaaacaaaacaaaaacccagaaacatgatggttaccaatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aacaaacaaacaaacaaaacaaaacaaaacaaaaacccagaaacatgatggttaccaatt 444

                                                                       
Query: 245 ccacaggaatcatgaaatcatatcaagttgtttagtagtataataagagctgtaaaaaac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccacaggaatcatgaaatcatatcaagttgtttagtagtataataagagctgtaaaaaac 504

                              
Query: 305 aaaaacaaaaagatattga 323
           |||||||||||||||||||
Sbjct: 505 aaaaacaaaaagatattga 523


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)