Query= MSMg01no270_d07.b1 MSMg01no270_d07.b1 CHROMAT_FILE:
MSMg01no270_d07.b1 PHD_FILE: MSMg01no270_d07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:48 2005
(696 letters)
>mm_chr4_5708812_5709907
Length = 1096
Score = 1220 bits (631), Expect = 0.0
Identities = 677/695 (97%), Gaps = 5/695 (0%)
Strand = Plus / Plus
Query: 5 gaattctttcagagtcatctccctaatgtcacacaacagttagaaagcatcctattccat 64
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 200 gaattctttcagagccatctccctaatgtcacacaacagttagaaagcatcttattccat 259
Query: 65 ctctgacacctgtgatccgctgtccctccatgttcagtttgcagttaatttttcagcagt 124
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ctctgacacctgtgacccgctgtccctccatgttcagtttgcagttaatttttcagcagt 319
Query: 125 ttttttaatatttattttattt-----atgtatgtatgtatttatttaatgtatgtgagt 179
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 320 ttttttaatatttattttattttatttatgtatgtatgtatttatttaatgtatgtgagt 379
Query: 180 acactgtggctgtcttcagacataccagaagaggacatcgaatcccattacagacggtta 239
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 380 acactgtggctgtcttcagacataccagaagagcacatcgaatcccattacagacggtta 439
Query: 240 ttagccaccatgtggttgctgggaattgaactcaggacctctgaaagagcagtcagtgct 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttagccaccatgtggttgctgggaattgaactcaggacctctgaaagagcagtcagtgct 499
Query: 300 cttaaccattgagccatctctccagccctgcagttaattttttattccttttctttcaat 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cttaaccattgagccatctctccagccctgcagttaattttttattccttttctttcaat 559
Query: 360 gtagaggtgtgcttttctttgtactgtatatttcccatcagcacataaataccacacctc 419
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 560 atagaggtgtgcttttctttgtactgtatatttcccatcagcatataaataccacacctc 619
Query: 420 tgccatcttgaagtgaatacttctcccagttctgcccacccacctctagcagtcgctaca 479
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 620 tgccatcttgaagtgaatacttctcccagctctgcccacccacctctagcagtcgctgca 679
Query: 480 tctcaaaacccaagaaacaaacctattcccttctcttcttctgagggttactcagttcca 539
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 680 tctcaaaacccaagaaacaaacctattcccttctcttcttctgagggttcctcagtccca 739
Query: 540 tacctttatctcttctgtgggtgttgacagcactttctcccatgctaaatctctgctctc 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tacctttatctcttctgtgggtgttgacagcactttctcccatgctaaatctctgctctc 799
Query: 600 tttttctattcagcatctattcatgtcacaccacatactatctttatgtgtgccacacat 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 tttttctattcagcatctattcatgtcacaccacatactatctttatgtgtgccacacat 859
Query: 660 gtcagctccataggtcattcatatttttccctacc 694
||||| | ||||||||||||||||||||| |||||
Sbjct: 860 gtcagattcataggtcattcatatttttctctacc 894
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1096
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1086
Effective search space: 744996
Effective search space used: 744996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no270_d07.g1 MSMg01no270_d07.g1 CHROMAT_FILE:
MSMg01no270_d07.g1 PHD_FILE: MSMg01no270_d07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:48 2005
(650 letters)
>mm_chr4_5868642_5869691
Length = 1050
Score = 886 bits (458), Expect = 0.0
Identities = 467/470 (99%)
Strand = Plus / Minus
Query: 181 gtggccctgggttttataagaaagcaagctaagcaagctatggagaagaaagccagtatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1050 gtggccctgggttttataagaaagcaagctaagcaagctatggagaagaaagccagtatc 991
Query: 241 actcctcctactccatgtgagttcctgccctcactgcttctgatgataaactgttatatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 990 actcctcctactccatgtgagttcctgccctcactgcttctgatgataaactgttatatg 931
Query: 301 gaactgtgcataaaacaaactctttcctccccaacgtgctttttggccatggtgtttcat 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 930 gaactgtgcataaaacaaactctttcctccccaacgtgctttttagccatggtgtttcat 871
Query: 361 ggcagcaatagaaaccctaagataccatcccgtgggattcctcctctgagcctgggctgc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 ggcagcaatagaaaccctaagataccatcccgtgggattcctcctctgagcctgggctgc 811
Query: 421 agcaacactgtactccttagcaacagcacatgacaggagcaaagggattattctccagag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 agcaacactgtactccttagcaacagcacatgacaggagcaaagggattattctccagag 751
Query: 481 aacaaggtggtagttctgacaggcaagaatccgtgggttttgcagacttgctagaatcag 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 750 aacaaggtggtagttctgacaggcaagaatccgtgggttttgcagacttgctagaatctg 691
Query: 541 tctttcactgactggatgatgcaaactgccatgaagcaggagtccttgttggagaaactg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 tctttcactgactggatgatgcaaactgccatgaagcaggagtccttgttggagaaactg 631
Query: 601 aactgtcaaaaaactgtgttacttctttttgctttgcagagatcataatg 650
||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 630 aactgtcaaaaaactgtgttacttctttttgctttgcagtgatcataatg 581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space: 665600
Effective search space used: 665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
