BAC Information

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BAC

Clone NameMSMg01-270D16
Chromosome4 (Build37)
Map Location 18,747,232 - 18,747,461
singlet/doubletsinglet
Overlap genenone
Upstream geneMmp16
Downstream geneLOC667251, LOC435772, Cngb3, LOC623122, Cpne3, LOC100040306, 2410005O16Rik, Wwp1, Slc7a13
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-270D16.T7 (MSMg01no270_d16.b1)MSMg01-270D16.TJ (MSMg01no270_d16.g1)
ACCAG410126
length716738
length of high quality
(start - end)
---232 (124 - 355)
definitionCHROMAT_FILE: MSMg01no270_d16.b1 PHD_FILE: MSMg01no270_d16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:50 2005CHROMAT_FILE: MSMg01no270_d16.g1 PHD_FILE: MSMg01no270_d16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXC
TACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACTTGAGTATGTAGAGAAAGTATTTTCC
AAAATTCCTGCTATTTTCACCGGGACAGGAACACACAAACCTTGCCCCAG
CAACCCTGTGCACCACCCCAGAGGAATAAACACCCCTTTCCTTCTCTCAA
TAAAAGAACCAGTTCCTTGAAGCTATTCCAGGCTGTGTTCTTCGCCTTCA
CACTCATTGTTGACTGAAATGCTGCTAACCACCCACTGGTGCCCAGTTCA
GCTCTCCCCTCTCCAGTGTAGCTCTATGCACAACATATCTGGCTATCCTG
AGGTATAATCGCTTACCGCCCCCCCCCTGGGGTTCTTTTTAGAATCTTCC
TACCTATGTCTGCATCTCGAAGAAAAATATTGTAGTAATTTCAAACTGAG
GGGCCTTAAAGTCTTTGACCCATGTTATTTACTCTTTGAGCACAAAGATA
TGGCTTTTAAAATATTTTTCTATGCGTAAAAATCCAGCATTCTCAACAGC
ATTCACTTAATTTGGCCTTTCCTTCCATGCATGATTTCGACAGTCTTGCT
ATAAATTAGGTGATTATAGCTGTGTGAACTTATGGATCATTTACTCTACT
CCATTGCTCTACAGGGCTGCTTAATGCACACCTCAGACCCTTTTTTTGTT
GCTAAAAATGACTAAAATCACGTACTATGATCCACCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no270_d16.g1 MSMg01no270_d16.g1 CHROMAT_FILE:
MSMg01no270_d16.g1 PHD_FILE: MSMg01no270_d16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:50 2005
         (232 letters)



>mm_chr4_18747032_18747663
          Length = 632

 Score =  414 bits (214), Expect = e-120
 Identities = 226/230 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gacaggaacacacaaaccttgccccagcaaccctgtgcaccaccccagaggaataaacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 430 gacaggaacacacaaaccttgccccagcaaccctgtgcaccaccccagaggaataaatac 371

                                                                       
Query: 61  ccctttccttctctcaataaaagaaccagttccttgaagctattccaggctgtgttcttc 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ccctttccctctctcaataaaagaaccagttccttgaagctattccaggctgtgttcttc 311

                                                                       
Query: 121 gccttcacactcattgttgactgaaatgctgctaaccacccactggtgcccagttcagct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gccttcacactcattgttgactgaaatgctgctaaccacccactggtgcccagttcagct 251

                                                             
Query: 181 ctcccctctccagtgtagctctatgcacaacatatctggctatcctgagg 230
           ||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 250 ctcccctctccagggcagctctatgcacaacatatctggctatcctgagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)