Query= MSMg01no270_l01.b1 MSMg01no270_l01.b1 CHROMAT_FILE:
MSMg01no270_l01.b1 PHD_FILE: MSMg01no270_l01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:24 2005
(629 letters)
>mm_chr4_83233106_83234136
Length = 1031
Score = 1141 bits (590), Expect = 0.0
Identities = 621/632 (98%), Gaps = 5/632 (0%)
Strand = Plus / Plus
Query: 1 ggcctcgaactcagacattcacctgcctcttcctcccaagtgctgggtattc-cggcgtg 59
|||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||
Sbjct: 201 ggcctcgaactcagacattcacctgcctctgcctcccaagtgctggg-attcaaggcgtg 259
Query: 60 tgttactaattttaagcaagttagttttgacttactggagaaagagtttaatatctaaac 119
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tgttactaattttaagcaagtcagttttgacttactggagaaagagtttaatatctaaac 319
Query: 120 tttaagacatgtctatgggtagttccatattga--ttttttttctctgtaaagtatttat 177
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 320 tttaagacatgtctatgggtagttccatattgattttttttttctctgtaaagtatttaa 379
Query: 178 ctgctctggtatctattgacttatgctaagggtctaaaattatttcaggcaattttattt 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctgctctggtatctattgacttatgctaagggtctaaaattatttcaggcaattttattt 439
Query: 238 ttttaattattgaaaatgtaaattaattttatgtaggtatatatgtatttcatatatgta 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttttaattattgaaaatgtaaattaattttatgtaggtatatatgtatttcatatatgta 499
Query: 298 tgcctgggtatttgctctcatgtatatttatgtaccatatatgtgcctagtacctgcaga 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgcctgggtatttgctctcatgtatatttatgtaccatatatgtgcctagtacctgcaga 559
Query: 358 ggccacaagagggccttagattcccagggactgaagtcacagactattgtgagctgccac 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ggccacaagagggccttagattcccagggactgaagtcacagactattgtgagctgccac 619
Query: 418 aaagatactaggaattgaacccaggtcttctagaagaaaagccagctaattttagaccga 477
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 620 aaagatactaggaattgaacccaggtcttctagaagagaagccagctaattttagaccga 679
Query: 478 tatgtgattattcttagttatgtggtataggtttttattcctataataaaatacataact 537
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 680 tatgtgattattcttagttatgtggtataggttttttttcctataataaaatacataact 739
Query: 538 gaagtaactctagggagggctatttatttgggtttagggcttggggtacagttcaccacg 597
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 740 gaagtaactctagggagggctatttatttgggtt-agggcttggggtacagttcaccacg 798
Query: 598 gcagggggagcagtcaggaagaatagggcttc 629
||||||||||||||||||||||||||||||||
Sbjct: 799 gcagggggagcagtcaggaagaatagggcttc 830
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1031
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1021
Effective search space: 631999
Effective search space used: 631999
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no270_l01.g1 MSMg01no270_l01.g1 CHROMAT_FILE:
MSMg01no270_l01.g1 PHD_FILE: MSMg01no270_l01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:25 2005
(610 letters)
>mm_chr4_83447246_83448255
Length = 1010
Score = 1172 bits (606), Expect = 0.0
Identities = 609/610 (99%)
Strand = Plus / Minus
Query: 1 ggttgaaagaatacatggaaagagtgataatggcggaaactctcacaataaagacagaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 ggttgaaagaatacatggaaagagtgataatggcggaaactctcacaataaagacagaag 751
Query: 61 tgtgtgctgagctgacccagctacatcttggcggtgactttagactccgctagagtgaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 tgtgtgctgagctgacccagctacatcttggcggtgactttagactccgctagagtgaaa 691
Query: 121 cactgcagctgctgaatattttatccctttgaaggcacatgtgaacatgttctccatcga 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 cactgcaactgctgaatattttatccctttgaaggcacatgtgaacatgttctccatcga 631
Query: 181 aaagtatcgaaagtaaatcactagaatattcctccatgtactcaggtcactactcctgac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 aaagtatcgaaagtaaatcactagaatattcctccatgtactcaggtcactactcctgac 571
Query: 241 ccagacctttacctgctcgatccaccttaggttctgtgcacacggcacttcctgatgtgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 ccagacctttacctgctcgatccaccttaggttctgtgcacacggcacttcctgatgtgg 511
Query: 301 aaagcaccttcatgggcacgttatcccatcatccatcttcccacagccctgagagccaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 aaagcaccttcatgggcacgttatcccatcatccatcttcccacagccctgagagccaaa 451
Query: 361 gcaagacaggcttcatcgccttcccagagggggagtggaagctcatgatgcacacggact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gcaagacaggcttcatcgccttcccagagggggagtggaagctcatgatgcacacggact 391
Query: 421 ggccaaggtgcttacgttacagagtcaggaccccaatccagggattccgtctctccacat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ggccaaggtgcttacgttacagagtcaggaccccaatccagggattccgtctctccacat 331
Query: 481 gatctctctaataccttgatgccctgctccctagaaaatgggattgttctgtcctttcca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 gatctctctaataccttgatgccctgctccctagaaaatgggattgttctgtcctttcca 271
Query: 541 aatgccatgctgttatgaaactaactaccatcctaatcaacatgatgttgtagcatattc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 aatgccatgctgttatgaaactaactaccatcctaatcaacatgatgttgtagcatattc 211
Query: 601 cgggataaac 610
||||||||||
Sbjct: 210 cgggataaac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space: 600000
Effective search space used: 600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
