Query= MSMg01no270_l04.b1 MSMg01no270_l04.b1 CHROMAT_FILE:
MSMg01no270_l04.b1 PHD_FILE: MSMg01no270_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:25 2005
(652 letters)
>mm_chr4_41469779_41470831
Length = 1053
Score = 1226 bits (634), Expect = 0.0
Identities = 646/650 (99%), Gaps = 1/650 (0%)
Strand = Plus / Minus
Query: 4 ggaattcaaaaaaataaaacaggtcttgcagttctccttctagcgcacacccaggcagcc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 ggaattcaaaaaaataaaacaggtcttgcagttctccttctagcgcacacccaggcagcc 794
Query: 64 ccctggttgattttctaaacacaacagcagctcttttgatggacttgcttgccttcctag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 ccctggttgattttctaaacacaacagcagctcttttgatggacttgcttgccttcctag 734
Query: 124 gacattctattcaaagtacagctacttttgtttattgttgttttaatgcaataataaaag 183
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 733 gacattctattcaaagtacagctacttttgtttattgttgttttaatgcaacaataaaag 674
Query: 184 tatttcaaatgcatacaagttctgtactctctccacaggcaaccattccaggttcttgta 243
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 tattttaaatgcatacaagttctgtactctctccacaggcaaccattccaggttcttgta 614
Query: 244 gcttcattttgtacttgagcacaagagcggcattacattgtgcacattttgtgagccttg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gcttcattttgtacttgagcacaagagcggcattacattgtgcacattttgtgagccttg 554
Query: 304 ctccctcccctggatgatgtcctacagagaatggcttcattcttttaaatggttgcatag 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ctccctcccctggatgatgtcctacagagaatggcttcattcttttaaatggttgcatag 494
Query: 364 tagtccgtagtttgagccttgtcagcttattgtctccgtttgttttcatgatttcaaaca 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tagtccgtagtttgagccttgtcagcttattgtctccgtttgttttcatgatttcaaaca 434
Query: 424 aagttagcatgctgttaaaatagcatttttatttccttcaccatagaattgccaccaaaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 aagttagcatgctgttaaaatagcatttttatttccttcaccatagaattgccaccaaaa 374
Query: 484 ctcatggacattcacaacttgtctcacttaagataaag-aaatcaccaagaaatgtaagg 542
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 373 ctcatggacattcacaacttgtctcacttaagataaagaaaatcaccaagaaatgtaagg 314
Query: 543 caaagtgcaccccctagaggcttgatattgtaatggcagttgctgtctgctgaagagcct 602
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 313 caaagtgcaccccctagaggcttgatatggtaatggcagttgctgtctgctgaagagcct 254
Query: 603 ggaaaactaaaatagaggcagagaggttagagggtaggagacagcgcttc 652
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggaaaactaaaatagaggcagagaggttagagggtaggagacagcgcttc 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1053
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1043
Effective search space: 669606
Effective search space used: 669606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no270_l04.g1 MSMg01no270_l04.g1 CHROMAT_FILE:
MSMg01no270_l04.g1 PHD_FILE: MSMg01no270_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:25 2005
(360 letters)
>mm_chr4_41309173_41309934
Length = 762
Score = 638 bits (330), Expect = 0.0
Identities = 354/362 (97%), Gaps = 3/362 (0%)
Strand = Plus / Plus
Query: 1 aaaattcacata-tttgctaaaaagaaaatagaaacctatcttcttttctattttgagtt 59
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 aaaa-tcacatactttgctaaaaagaaaatagaaacctatcttcttttctattttgagtt 260
Query: 60 tgagttgtatccgctttgatacaacattttctatttattttacccagattcctaaatgta 119
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgagttgtatcagctttgatacaacattttctatttattttacccagattcctaaatgta 320
Query: 120 cctaaagtggtgtttttcattgcttaaaaggggga-gggggacagtgtctttagggttct 178
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 cctaaagtggcgtttttcattgcttaaaagggggaggggggacagtgtctttagggttct 380
Query: 179 ttactttcttttgtttattaattggcttggtctgtatcttatttttctcttttagatagt 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttactttcttttgtttattaattggcttggtctgtatcttatttttctcttttagatagt 440
Query: 239 atatgccaggcatagtggtgcaaatcttgatgcataggtatttgcaaatatgtatgttta 298
|| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 441 atttgccaggcatagtggtgcaaatcttgatgcataggtatttgcaagtgtgtatgttta 500
Query: 299 agaacagctcagtcagcttatcggttggctggctctgtgtctgtctgcctttgctctgtt 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaacagctcagtcagcttatcggttggctggctctgtgtctgtctgcctttgctctgtt 560
Query: 359 tc 360
||
Sbjct: 561 tc 562
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 762
Length adjustment: 9
Effective length of query: 351
Effective length of database: 753
Effective search space: 264303
Effective search space used: 264303
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
