BAC Information

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BAC

Clone NameMSMg01-270L22
Chromosome4 (Build37)
Map Location 117,821,049 - 117,821,362
singlet/doubletsinglet
Overlap geneJmjd2a
Upstream geneLOC625405, Rps8, Kif2c, Gm1661, Tmem53, 4931406I20Rik, LOC100041093, Prnpip1, Dmap1, LOC433749, Klf17, Ppia-ps4_1138.1, Slc6a9, B4galt2, Atp6v0b, Dph2, Ipo13, Artn, St3gal3
Downstream genePtprf, Hyi, BC059842, Med8, Elovl1, Cdc20, Mpl, Tie1, LOC545675, LOC666596, 2610528J11Rik, 6330530A05Rik, 1110020C03Rik, Ebna1bp2, LOC100041290, Olfr62, Olfr1343-ps1, Olfr1342, Olfr1341, Olfr1340, Olfr1339, Olfr1338, Olfr1524-ps1, Olfr1337, Olfr219-ps1, GA_x5J8B7W3BSW-40181-41086, Olfr1335, Olfr1333, GA_x5J8B7TQTH0-2-774, Olfr1332-ps1, Olfr1331, Olfr1330, Olfr1329, Olfr1519, Lao1, LOC666703, OTTMUSG00000008833, Slc2a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-270L22.T7 (MSMg01no270_l22.b1)MSMg01-270L22.TJ (MSMg01no270_l22.g1)
ACCAG410492AG410493
length730764
length of high quality
(start - end)		323 (41 - 363)370 (386 - 755)
definitionCHROMAT_FILE: MSMg01no270_l22.b1 PHD_FILE: MSMg01no270_l22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:29 2005CHROMAT_FILE: MSMg01no270_l22.g1 PHD_FILE: MSMg01no270_l22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AATGAGATCATGGCCCAACAGGCCCCTCACTGTGCTGTGTGTATGATCTT
CCAGACCTACCATCAGGTGAGCGTGCTTTGCTGCCGCCAGATATCCTGGG
CCAGCAATCGGAGGAAGCGGGGTTTAATTGTGGGTGCGAGGCTTGTCACT
GCTTGTCTTAGGAGGCCTTTCCCCTAGTATCCTCGTTCTGTTAATGCTCG
CGTGGCTATGCCAGGCAGATAACACTTAAGAATGCTTTGATCTGGTGACC
CTTGTTTGTGACACAGATCTCGATGTTTGCAGAGCATGTTTCTTCTTATC
TTTCTGGTCCTAGGGTCNNTCCTNTCCATNNCATGCAGTCCTGATCAATT
AGGGTACAAGAATGCAGTTTCTTTCACAAAAAACATTAGCCTTGGGCCAG
GAGCCCGGTCTTCTCATGCCATTTTCTTTTTTTCCCCTCCTCATTGTCAT
AGTGAGTGCTGCCTGAGCAGAAGGCAGCTGGGGCCAGGGAGGCGGGAGGG
CAGAGGCTCTGCCACAGTGAAGGCTGGGCTCAACTGTGGGCTTCCCATGC
CGGTCCACTGATGACCTCACAGTGTGGATCGCTTTGGGTCGAGCTCCAGA
AGGTCAGACAGGAATTCACAGCAGGCAGGTGCCGAGTAACCAACTCAGGC
TCAAATGGGTCCTACGCCGTGTGGCAGTAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATTTGCTCAGTGTCCAAATTACTGGAATGATC
TGGCTCTTACACATTCCTACGAGATGTCATCTGACTTCGTGTTCCATAAT
GCTCAGACTTCTCCAAGTTCACACAGCTGTTACATGAGAAAGGCATGAGG
ACCTGAGGATGAAGCCTAACACTCATGTCTTTCCAGCACAGTGGGTACTA
CAGGATGCTGCTATCATTTTCCTTCTGCAGTTCTTCACTAAGAGTGCAGG
CGAGACCGTGCAAGGGTTCTCTCACCTGGGCTCTCAGTCTTTGGAGAACA
AAAATTAATTTTATCNCATACACCCCCACCGCTGTGTAGATGTTTCCTAC
AGGGGCAGATGGGAACCAGCACAGAGACCCACAGTTGAACAACGTGCAGA
GAGAACCCTGGTACCCCACACCATTTAGCCCTAAATGGGACATCTCCACC
AAATCCCACTCCTTAGAGCTCAGGGAACCCTGAGGTAGAGGAAGCAGAAT
GATTATAAAAACCAGAGGGGATGGAGGACATCAAAGAACAAGACCGTCTA
CACACAGTAGGGTCGATGCACGTATGAACTCACAGAGATGTCCTTAAGTC
GATTTTGGGGAAATATCTTATCAAAGCGACNAGAGAAGAAACTAAGATAG
AAAACGTCATCAGAAACTAACACCCATGTAGGCAAATTTTTAAAGCCACT
ATGGAAGACAACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no270_l22.b1 MSMg01no270_l22.b1 CHROMAT_FILE:
MSMg01no270_l22.b1 PHD_FILE: MSMg01no270_l22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:29 2005
         (323 letters)



>mm_chr4_117820846_117821568
          Length = 723

 Score =  592 bits (306), Expect = e-173
 Identities = 312/314 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaatgagatcatggcccaacaggcccctcactgtgctgtgtgtatgatcttcca 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ggaattcaatgagatcatggcccaacaggcccctcactgtgctgtgtgtatgatcttcca 458

                                                                       
Query: 64  gacctaccatcaggtgagcgtgctttgctgccgccagatatcctgggccagcaatcggag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 457 gacctaccatcaggtgagcgtgctttgctgccgccagatatcctgggccagcaattggag 398

                                                                       
Query: 124 gaagcggggtttaattgtgggtgcgaggcttgtcactgcttgtcttaggaggcctttccc 183
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 397 gaagcggggtttaattgtgggtgcgaggtttgtcactgcttgtcttaggaggcctttccc 338

                                                                       
Query: 184 ctagtatcctcgttctgttaatgctcgcgtggctatgccaggcagataacacttaagaat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ctagtatcctcgttctgttaatgctcgcgtggctatgccaggcagataacacttaagaat 278

                                                                       
Query: 244 gctttgatctggtgacccttgtttgtgacacagatctcgatgtttgcagagcatgtttct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 gctttgatctggtgacccttgtttgtgacacagatctcgatgtttgcagagcatgtttct 218

                         
Query: 304 tcttatctttctgg 317
           ||||||||||||||
Sbjct: 217 tcttatctttctgg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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