BAC Information

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BAC

Clone NameMSMg01-271B09
Chromosome4 (Build37)
Map Location 54,326,085 - 54,326,639
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc44a1, Fsd1l, LOC666483, Fcmd, Tal2, LOC435784, Tmem38b, LOC670124, LOC100041280
Downstream geneLOC666901, LOC100041303, LOC384018, EG666920, Zfp462, LOC670211
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-271B09.T7 (MSMg01no271_b09.b1)MSMg01-271B09.TJ (MSMg01no271_b09.g1)
ACCAG410739AG410740
length740739
length of high quality
(start - end)
696 (45 - 740)199 (120 - 318)
definitionCHROMAT_FILE: MSMg01no271_b09.b1 PHD_FILE: MSMg01no271_b09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:53 2005CHROMAT_FILE: MSMg01no271_b09.g1 PHD_FILE: MSMg01no271_b09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATGTTGAGTTATCTATGCAAAGAATGCTCTAATATTGCTGAGTTTT
ATTATCTTTCTAGTCAACACACATACCTAAATCTGTTCCACATGAGCTGA
TACCAGCACAAATCCACTAATCTATTTTTGTGAAATTGACTTGAAGCTAA
AATCTGGGCCTTATTTATGGTTGCTAATTTTTTCCCCATTGTTTGATTGT
CAGTCAATATTCCTGTCTGCTGAATCATTTAAACTAAGTCTAACAACTCG
GGATCTCTCTCAACATTGTATGGTGTGCTATTTAAATAAAGATTCAGGCT
TTGTCTTTATTCACGTGAATGAGGAAAATACTGAAAACAAAGGGGGGAAA
CTATATTTCATTTTGCTGCAAATTTAATTATCAGGTGACTCACCAATGTA
TCATCTGTCTTTGGTTAAATAGATTTATAAGTCTATCTAAAGCCAATTTG
ATATGTGCTAACATTTGGTCATGCGCTTTGCTGAAACTGAGAGTGTAAAT
CCAAATGCCCAGTTCTCTCTCTCTTTCTCCCCTCCCTATCTTGCATCTGA
AGTGTTACTCAAGGATTGCTTTGTCACATAGGGAGCAAGTTTACATCAAC
AGAATCAAAATTCAGATTAATCAATTCAGTGATAGCAGAGAGCATGGGTT
ATTTTTTTTTAAGTGTAAGAGGGATGTCTAGTACATGCTA
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTTCTTTATGTCCTCTACCATCATCATGAGATA
TGCTTTTAAATCCTTTTCCACCTTTTCAGGTGTGTTAGGGTGTCCTGGAT
TGGGCGAAGTGGGCGTTCTGGGTTCTGATGATGGTGAGTGGTCCTGGCTT
CTGTTAGTAGGATTCTTACGTTTACCTTTCGCCATCTGGCAATCTCTGGA
GTTAGTTGTTATAGTTGGCTTTGTTAAGAGATTGTTCCTCTGTTGATTTT
GTTACCCTCTATCAGTTTTTTTTTAGACAAGCTCTCTTCTCTGAGTTTCA
GTGTTCAGATAGCCTNTGNACCAAGCTCTCCTCTCTCAGGGAAGGGGTAC
AGGTATCCGGCGTTTGAACTCATCCAGAATGATGGTGAAGGCCCAAAACA
GGATCTTTCCCAGAAGCTGTGTTGCTTTGGCCAGGAAGGTGGCCAGTTGT
CTGGAGTCGAAGATGTCGCCGCCTCAGAAGCTCTGTGGCTCTTGTCCGGA
AGGAGGCCGGCCGTCTGGAGCTGAGGTTGGCACAGCCTCAGAAGCTCTGT
GGCTCTTGCCGGGAAGGTGGCTGGTTGTCGGGAGCTGAAGATGGCGCCGC
CCCAGAATCTCTGTGACTCTCTCGCCCGTCCCAGAAACGGCTGGCACTCT
GTATTCCACACGGTCACCCGTGCAGCCTGTCCTCCTCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no271_b09.b1 MSMg01no271_b09.b1 CHROMAT_FILE:
MSMg01no271_b09.b1 PHD_FILE: MSMg01no271_b09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:53 2005
         (696 letters)



>mm_chr4_54325544_54326639
          Length = 1096

 Score = 1073 bits (555), Expect = 0.0
 Identities = 555/555 (100%)
 Strand = Plus / Minus

                                                                        
Query: 142  ttgacttgaagctaaaatctgggccttatttatggttgctaattttttccccattgtttg 201
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1096 ttgacttgaagctaaaatctgggccttatttatggttgctaattttttccccattgtttg 1037

                                                                        
Query: 202  attgtcagtcaatattcctgtctgctgaatcatttaaactaagtctaacaactcgggatc 261
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1036 attgtcagtcaatattcctgtctgctgaatcatttaaactaagtctaacaactcgggatc 977

                                                                        
Query: 262  tctctcaacattgtatggtgtgctatttaaataaagattcaggctttgtctttattcacg 321
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 976  tctctcaacattgtatggtgtgctatttaaataaagattcaggctttgtctttattcacg 917

                                                                        
Query: 322  tgaatgaggaaaatactgaaaacaaaggggggaaactatatttcattttgctgcaaattt 381
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916  tgaatgaggaaaatactgaaaacaaaggggggaaactatatttcattttgctgcaaattt 857

                                                                        
Query: 382  aattatcaggtgactcaccaatgtatcatctgtctttggttaaatagatttataagtcta 441
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856  aattatcaggtgactcaccaatgtatcatctgtctttggttaaatagatttataagtcta 797

                                                                        
Query: 442  tctaaagccaatttgatatgtgctaacatttggtcatgcgctttgctgaaactgagagtg 501
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796  tctaaagccaatttgatatgtgctaacatttggtcatgcgctttgctgaaactgagagtg 737

                                                                        
Query: 502  taaatccaaatgcccagttctctctctctttctcccctccctatcttgcatctgaagtgt 561
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736  taaatccaaatgcccagttctctctctctttctcccctccctatcttgcatctgaagtgt 677

                                                                        
Query: 562  tactcaaggattgctttgtcacatagggagcaagtttacatcaacagaatcaaaattcag 621
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676  tactcaaggattgctttgtcacatagggagcaagtttacatcaacagaatcaaaattcag 617

                                                                        
Query: 622  attaatcaattcagtgatagcagagagcatgggttatttttttttaagtgtaagagggat 681
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616  attaatcaattcagtgatagcagagagcatgggttatttttttttaagtgtaagagggat 557

                           
Query: 682  gtctagtacatgcta 696
            |||||||||||||||
Sbjct: 556  gtctagtacatgcta 542


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1096
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1086
Effective search space:   744996
Effective search space used:   744996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)