Query= MSMg01no271_g10.b1 MSMg01no271_g10.b1 CHROMAT_FILE:
MSMg01no271_g10.b1 PHD_FILE: MSMg01no271_g10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:16 2005
(315 letters)
>mm_chr4_5569140_5569857
Length = 718
Score = 538 bits (278), Expect = e-157
Identities = 304/314 (96%), Gaps = 3/314 (0%)
Strand = Plus / Plus
Query: 5 gaattccatgcacaggccaatggcccatttctttggaacaatactctaagcacaggaaaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatgcacaggccaatggcccatttctttggaacaatactctaagcacaggaaaa 264
Query: 65 ttctaattaaaaaaaaaa---ctaaaacaaaaaccaaaaaatattagtgtggtgaatttc 121
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 265 ttctaattaaaaaaaaaaaaactaaaacaaaaaccaaaaaacattagtgtggtgaatttc 324
Query: 122 cagaagactacggtagcccttcagattttgtcttgaaaagactgatcctagattagcaga 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cagaagactacggtagcccttcagattttgtcttgaaaagactgatcctagattagcaga 384
Query: 182 caatggaaagttgtagaagtacacttattgtactaacagttaagacagaaaatgtactag 241
|||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 385 caatggggagttgtaaaagtacacttattgtactaacagctaagacagaaaatgtactag 444
Query: 242 gagattctggtttagacattattgttttactcttgttctgtgaacccatctcttattggg 301
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 445 gagattctggtttagacactattgttttactcttgttctgtgaacacatctcttattggg 504
Query: 302 tttggagtataata 315
||||||||||||||
Sbjct: 505 tttggagtataata 518
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 718
Length adjustment: 9
Effective length of query: 306
Effective length of database: 709
Effective search space: 216954
Effective search space used: 216954
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no271_g10.g1 MSMg01no271_g10.g1 CHROMAT_FILE:
MSMg01no271_g10.g1 PHD_FILE: MSMg01no271_g10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:16 2005
(289 letters)
>mm_chr4_5695849_5696537
Length = 689
Score = 543 bits (281), Expect = e-159
Identities = 287/289 (99%)
Strand = Plus / Minus
Query: 1 ttgacatcgccatgctcatattaacaactcatactaactcaggactccaccgcacacccc 60
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct: 489 ttgacatcgccatgctcatattaacaactcatacttactcaggactccatcgcacacccc 430
Query: 61 ttttcccctgaagtacagcacaaaggtacggacacgcttctacaaggagcatcagtgcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ttttcccctgaagtacagcacaaaggtacggacacgcttctacaaggagcatcagtgcag 370
Query: 121 acatgagcatggaacatggaagacgtttcttaccactaatccaatacctgccagaccatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 acatgagcatggaacatggaagacgtttcttaccactaatccaatacctgccagaccatg 310
Query: 181 aactgatctcttctttcctagcaaatagatgagcaggttcctgatggaagaatgcttgaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 aactgatctcttctttcctagcaaatagatgagcaggttcctgatggaagaatgcttgaa 250
Query: 241 atctgagtgccctggaattcagctggttcctcgtgggggtcaggatgtc 289
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 atctgagtgccctggaattcagctggttcctcgtgggggtcaggatgtc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space: 190400
Effective search space used: 190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
