MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-271I06
Chromosome	4 (Build37)
Map Location	135,938,840 - 135,938,955
singlet/doublet	singlet
Overlap gene	none
Upstream gene	A330049M08Rik, LOC665287, Dscr1l2, Npal3, 4930555I21Rik, Grhl3, 1700029M20Rik, Il28ra, Il22ra1, LOC665334, Myom3, Fusip1, Pnrc2, Cnr2, Fuca1, Hmgcl, Gale, Lypla2, 1110049F12Rik, LOC669445, Tceb3, Rpl11, Id3, E2f2, Ddefl1, Tcea3, Zfp46, Hnrpr
Downstream gene	Htr1d, LOC100042540, Luzp1, Aof2, LOC667080, LOC433770, 4930549C01Rik, BC029684, Ephb2, C1qb, C1qc, C1qa, Epha8, Zbtb40, Wnt4, Cdc42
Link	Open Mouse BAC browser

Click to get alignment info.

name	A330049M08Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:230822 MGI:2444888
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC665287 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665287
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	Dscr1l2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:53902 MGI:1858220
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Npal3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74552 MGI:1921802
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4930555I21Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78806 MGI:1926056
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Grhl3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:230824 MGI:2655333
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1700029M20Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73937 MGI:1913597
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein

name	Il28ra (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:242700 MGI:2429859
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Il22ra1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:230828 MGI:2663588
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC665334 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665334
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 ESTs, 2 Proteins pseudo : _no_value

name	Myom3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:242702 MGI:2685280
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 19 ESTs, 5 Proteins

name	Fusip1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14105 MGI:1333805
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Pnrc2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:52830 MGI:106512
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cnr2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12802 MGI:104650
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Fuca1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71665 MGI:95593
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hmgcl (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15356 MGI:96158
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gale (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74246 MGI:1921496
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Lypla2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:26394 MGI:1347000
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1110049F12Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66193 MGI:1913443
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC669445 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:669445
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 22 Proteins pseudo : _no_value

name	Tceb3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:27224 MGI:1351315
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rpl11 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67025 MGI:1914275
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Id3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15903 MGI:96398
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	E2f2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:242705 MGI:1096341
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ddefl1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:230837 MGI:2684986
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tcea3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21401 MGI:1196908
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Zfp46 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22704 MGI:99192
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hnrpr (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74326 MGI:1891692
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Htr1d (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15552 MGI:96276
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042540 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042540
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs

name	Luzp1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:269593 MGI:107629
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Aof2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:99982 MGI:1196256
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC667080 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667080
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 3 Proteins pseudo : _no_value

name	LOC433770 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:433770
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 23 ESTs, 23 Proteins pseudo : _no_value

name	4930549C01Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67663 MGI:1914913
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	BC029684 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:242707 MGI:2448566
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 1 Protein

name	Ephb2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13844 MGI:99611
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	C1qb (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12260 MGI:88224
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	C1qc (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12262 MGI:88225
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	C1qa (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12259 MGI:88223
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Epha8 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13842 MGI:109378
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Zbtb40 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:230848 MGI:2682254
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Wnt4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22417 MGI:98957
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cdc42 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12540 MGI:106211
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	A330049M08Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21704093 GeneID:230822 MGI:2444888
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA A330049M08 gene transcript_id : NM_145555.1

name	Dscr1l2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802845 GeneID:53902 MGI:1858220
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Down syndrome critical region gene 1-like 2 transcript_id : NM_022980.4

name	Npal3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142364504 GeneID:74552 MGI:1921802
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : NIPA-like domain containing 3 transcript_id : NM_028995.3

name	4930555I21Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801735 GeneID:78806 MGI:1926056
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4930555I21 gene transcript_id : NM_030189.2

name	Grhl3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:71480135 GeneID:230824 MGI:2655333
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : grainyhead-like 3 (Drosophila) transcript_id : NM_001013756.1

name	Il28ra (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254284 GeneID:242700 MGI:2429859
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : interleukin 28 receptor alpha transcript_id : NM_174851.2

name	Il22ra1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:30142708 GeneID:230828 MGI:2663588
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : interleukin 22 receptor, alpha 1 transcript_id : NM_178257.1

name	Myom3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94372579 GeneID:242702 MGI:2685280
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 19 ESTs, 5 Proteins product : myomesin family, member 3 transcript_id : XM_144099.7

name	Fusip1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:122937375 GeneID:14105 MGI:1333805
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : FUS interacting protein (serine-arginine rich) 1 transcript_id : NM_010178.2

name	Fusip1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:122937371 GeneID:14105 MGI:1333805
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : FUS interacting protein (serine-arginine rich) 1 transcript_id : NM_001080387.1

name	Pnrc2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142374269 GeneID:52830 MGI:106512
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : proline-rich nuclear receptor coactivator 2 transcript_id : NM_026383.2

name	Cnr2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31981836 GeneID:12802 MGI:104650
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cannabinoid receptor 2 (macrophage) transcript_id : NM_009924.2

name	Fuca1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802500 GeneID:71665 MGI:95593
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : fucosidase, alpha-L- 1, tissue transcript_id : NM_024243.3

name	Hmgcl (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6680232 GeneID:15356 MGI:96158
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : 3-hydroxy-3-methylglutaryl-Coenzyme A lyase transcript_id : NM_008254.1

name	Gale (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130587 GeneID:74246 MGI:1921496
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : galactose-4-epimerase, UDP transcript_id : NM_178389.3

name	Lypla2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:7242155 GeneID:26394 MGI:1347000
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : lysophospholipase 2 transcript_id : NM_011942.1

name	1110049F12Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802905 GeneID:66193 MGI:1913443
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1110049F12 gene transcript_id : NM_025411.3

name	Tceb3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801340 GeneID:27224 MGI:1351315
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transcription elongation factor B (SIII), polypeptide 3 transcript_id : NM_013736.3

name	Rpl11 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142359456 GeneID:67025 MGI:1914275
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ribosomal protein L11 transcript_id : NM_025919.2

name	Id3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6680340 GeneID:15903 MGI:96398
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : inhibitor of DNA binding 3 transcript_id : NM_008321.1

name	E2f2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803420 GeneID:242705 MGI:1096341
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : E2F transcription factor 2 transcript_id : NM_177733.3

name	Ddefl1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:56711263 GeneID:230837 MGI:2684986
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : development and differentiation enhancing factor-like 1 transcript_id : NM_001008232.1

name	Tcea3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:32189437 GeneID:21401 MGI:1196908
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transcription elongation factor A (SII), 3 transcript_id : NM_011542.1

name	Zfp46 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:76253915 GeneID:22704 MGI:99192
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger protein 46 transcript_id : NM_009557.3

name	Hnrpr (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:33859723 GeneID:74326 MGI:1891692
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : heterogeneous nuclear ribonucleoprotein R transcript_id : NM_028871.1

name	Htr1d (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142389109 GeneID:15552 MGI:96276
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : 5-hydroxytryptamine (serotonin) receptor 1D transcript_id : NM_008309.3

name	LOC100042540 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149253174 GeneID:100042540
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs product : hypothetical protein LOC100042540 transcript_id : XM_001479038.1

name	Luzp1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:119433662 GeneID:269593 MGI:107629
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : leucine zipper protein 1 transcript_id : NM_024452.2

name	Aof2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:39930514 GeneID:99982 MGI:1196256
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : amine oxidase (flavin containing) domain 2 transcript_id : NM_133872.1

name	4930549C01Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802988 GeneID:67663 MGI:1914913
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4930549C01 gene transcript_id : NM_026300.2

name	BC029684 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149253147 GeneID:242707 MGI:2448566
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 1 Protein product : cDNA sequence BC029684 transcript_id : XM_205950.7

name	Ephb2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118129939 GeneID:13844 MGI:99611
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Eph receptor B2 transcript_id : NM_010142.2

name	C1qb (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133893071 GeneID:12260 MGI:88224
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : complement component 1, q subcomponent, beta polypeptide transcript_id : NM_009777.2

name	C1qc (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:113680119 GeneID:12262 MGI:88225
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : complement component 1, q subcomponent, C chain transcript_id : NM_007574.2

name	C1qa (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124286804 GeneID:12259 MGI:88223
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : complement component 1, q subcomponent, alpha polypeptide transcript_id : NM_007572.2

name	Epha8 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6679662 GeneID:13842 MGI:109378
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Eph receptor A8 transcript_id : NM_007939.1

name	Zbtb40 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:38016186 GeneID:230848 MGI:2682254
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger and BTB domain containing 40 transcript_id : NM_198248.1

name	Wnt4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6678594 GeneID:22417 MGI:98957
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : wingless-related MMTV integration site 4 transcript_id : NM_009523.1

name	Cdc42 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6753363 GeneID:12540 MGI:106211
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cell division cycle 42 homolog (S. cerevisiae) transcript_id : NM_009861.1

name	Dscr1l2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:12667790 CCDS:CCDS18785.1 GeneID:53902 MGI:1858220
definition	GO_function : GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0019722 - calcium-mediated signaling [Evidence IEA] codon_start : 1 product : Down syndrome critical region gene 1-like 2 protein_id : NP_075356.1

name	Npal3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:58037383 CCDS:CCDS18786.1 GeneID:74552 MGI:1921802
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] codon_start : 1 note : novel protein containing a DUF803 domain product : NIPA-like domain containing 3 protein_id : NP_083271.1

name	4930555I21Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21313496 CCDS:CCDS18787.1 GeneID:78806 MGI:1926056
definition	codon_start : 1 product : hypothetical protein LOC78806 protein_id : NP_084465.1

name	Grhl3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:71480136 GeneID:230824 MGI:2655333
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0007398 - ectoderm development [Evidence IMP]; GO:0008544 - epidermis development [Evidence IMP]; GO:0007389 - pattern specification [Evidence IMP]; GO:0045941 - positive regulation of transcription [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA]; GO:0042060 - wound healing [Evidence IMP] codon_start : 1 note : grainy head-like 3; transcription factor hSOM1; sister-of-mammalian grainyhead product : transcription factor CP2-like 4 protein_id : NP_001013778.1

name	Il28ra (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40254285 CCDS:CCDS18788.1 GeneID:242700 MGI:2429859
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004907 - interleukin receptor activity [Evidence ISS]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 exception : mismatches in translation note : class II cytokine receptor 12; interferon-lambda receptor 1 product : interleukin 28 receptor alpha protein_id : NP_777276.2

name	Il22ra1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30142709 CCDS:CCDS18789.1 GeneID:230828 MGI:2663588
definition	GO_function : GO:0004872 - receptor activity [Evidence IEA] codon_start : 1 note : interleukin-22 receptor alpha chain product : interleukin 22 receptor, alpha 1 protein_id : NP_839988.1

name	Myom3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82895260 GeneID:242702 MGI:2685280
definition	codon_start : 1 product : myomesin family, member 3 protein_id : XP_144099.6

name	Fusip1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753820 CCDS:CCDS18791.1 GeneID:14105 MGI:1333805
definition	GO_component : GO:0005737 - cytoplasm [Evidence IC] [Evidence ISS]; GO:0005654 - nucleoplasm [Evidence IDA]; GO:0005634 - nucleus [Evidence ISS] [Evidence IEA] [Evidence IC] GO_function : GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]; GO:0031202 - RNA splicing factor activity, transesterification mechanism [Evidence IDA]; GO:0051082 - unfolded protein binding [Evidence NAS] GO_process : GO:0016482 - cytoplasmic transport [Evidence IDA]; GO:0006406 - mRNA export from nucleus [Evidence NAS]; GO:0006397 - mRNA processing [Evidence IEA]; GO:0048025 - negative regulation of nuclear mRNA splicing, via spliceosome [Evidence IDA]; GO:0000398 - nuclear mRNA splicing, via spliceosome [Evidence IEA]; GO:0045449 - regulation of transcription [Evidence NAS] [Evidence ISS] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; Fus-associated protein with serine-arginine repeats; neural-salient serine/arginine-rich product : FUS interacting protein (serine-arginine rich) 1 isoform 1 protein_id : NP_034308.1

name	Fusip1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:122937372 GeneID:14105 MGI:1333805
definition	GO_component : GO:0005737 - cytoplasm [Evidence IC] [Evidence ISS]; GO:0005654 - nucleoplasm [Evidence IDA]; GO:0005634 - nucleus [Evidence ISS] [Evidence IEA] [Evidence IC] GO_function : GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]; GO:0031202 - RNA splicing factor activity, transesterification mechanism [Evidence IDA]; GO:0051082 - unfolded protein binding [Evidence NAS] GO_process : GO:0016482 - cytoplasmic transport [Evidence IDA]; GO:0006406 - mRNA export from nucleus [Evidence NAS]; GO:0006397 - mRNA processing [Evidence IEA]; GO:0048025 - negative regulation of nuclear mRNA splicing, via spliceosome [Evidence IDA]; GO:0000398 - nuclear mRNA splicing, via spliceosome [Evidence IEA]; GO:0045449 - regulation of transcription [Evidence NAS] [Evidence ISS] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; Fus-associated protein with serine-arginine repeats; neural-salient serine/arginine-rich product : FUS interacting protein (serine-arginine rich) 1 isoform 2 protein_id : NP_001073856.1

name	Pnrc2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13385876 CCDS:CCDS18792.1 GeneID:52830 MGI:106512
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : proline-rich nuclear receptor coactivator 2 protein_id : NP_080659.1

name	Cnr2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981837 CCDS:CCDS18793.1 GeneID:12802 MGI:104650
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 exception : mismatches in translation note : cannabinoid receptor 2 (spleen) product : cannabinoid receptor 2 (macrophage) protein_id : NP_034054.2

name	Fuca1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31541781 CCDS:CCDS18794.1 GeneID:71665 MGI:95593
definition	GO_component : GO:0005764 - lysosome [Evidence IEA] GO_function : GO:0004560 - alpha-L-fucosidase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA] GO_process : GO:0005975 - carbohydrate metabolism [Evidence IEA]; GO:0008152 - metabolism [Evidence IEA] codon_start : 1 exception : mismatches in translation note : alpha-L-fucosidase product : fucosidase, alpha-L-1, tissue protein_id : NP_077205.2

name	Hmgcl (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680233 CCDS:CCDS18795.1 GeneID:15356 MGI:96158
definition	GO_component : GO:0005743 - mitochondrial inner membrane [Evidence IDA]; GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0003824 - catalytic activity [Evidence IEA]; GO:0004419 - hydroxymethylglutaryl-CoA lyase activity [Evidence IEA]; GO:0016829 - lyase activity [Evidence IEA] codon_start : 1 exception : mismatches in translation product : 3-hydroxy-3-methylglutaryl-Coenzyme A lyase protein_id : NP_032280.1

name	Gale (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30409988 CCDS:CCDS18796.1 GeneID:74246 MGI:1921496
definition	GO_function : GO:0050662 - coenzyme binding [Evidence IEA]; GO:0016857 - racemase and epimerase activity, acting on carbohydrates and derivatives [Evidence IEA]; GO:0003978 - UDP-glucose 4-epimerase activity [Evidence IDA] GO_process : GO:0005975 - carbohydrate metabolism [Evidence IEA]; GO:0044237 - cellular metabolism [Evidence IEA] codon_start : 1 product : galactose-4-epimerase, UDP protein_id : NP_848476.1

name	Lypla2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7242156 CCDS:CCDS18797.1 GeneID:26394 MGI:1347000
definition	GO_function : GO:0016787 - hydrolase activity [Evidence IEA] GO_process : GO:0006631 - fatty acid metabolism [Evidence IEA]; GO:0006629 - lipid metabolism [Evidence IEA] codon_start : 1 note : lysophospholipase II product : lysophospholipase 2 protein_id : NP_036072.1

name	1110049F12Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28076883 GeneID:66193 MGI:1913443
definition	codon_start : 1 exception : unclassified translation discrepancy note : novel protein containing a DUF1000 domain product : thioredoxin family Trp26 protein_id : NP_079687.2

name	Tceb3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31543847 CCDS:CCDS18798.1 GeneID:27224 MGI:1351315
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003746 - translation elongation factor activity [Evidence IEA] GO_process : GO:0006952 - defense response [Evidence IEA]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 note : transcription elongation factor B (SIII), polypeptide 3 (110kD); Elongin A product : transcription elongation factor B (SIII), polypeptide 3 protein_id : NP_038764.2

name	Rpl11 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13385408 CCDS:CCDS18799.1 GeneID:67025 MGI:1914275
definition	GO_component : GO:0030529 - ribonucleoprotein complex [Evidence IEA] codon_start : 1 product : ribosomal protein L11 protein_id : NP_080195.1

name	Id3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680341 CCDS:CCDS18800.1 GeneID:15903 MGI:96398
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0019904 - protein domain specific binding [Evidence IDA]; GO:0030528 - transcription regulator activity [Evidence IEA] GO_process : GO:0030855 - epithelial cell differentiation [Evidence IDA]; GO:0007507 - heart development [Evidence IGI]; GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0045449 - regulation of transcription [Evidence IEA] codon_start : 1 product : inhibitor of DNA binding 3 protein_id : NP_032347.1

name	E2f2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29244208 CCDS:CCDS18801.1 GeneID:242705 MGI:1096341
definition	GO_component : GO:0005634 - nucleus [Evidence IDA]; GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0003700 - transcription factor activity [Evidence IDA] GO_process : GO:0006915 - apoptosis [Evidence IDA]; GO:0007049 - cell cycle [Evidence IEA]; GO:0000074 - regulation of progression through cell cycle [Evidence IDA]; GO:0045449 - regulation of transcription [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : E2F transcription factor 2 protein_id : NP_808401.1

name	Ddefl1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:56711264 CCDS:CCDS18802.1 GeneID:230837 MGI:2684986
definition	GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0043087 - regulation of GTPase activity [Evidence IEA] codon_start : 1 product : development and differentiation enhancing factor-like 1 protein_id : NP_001008233.1

name	Tcea3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:32189438 CCDS:CCDS18803.1 GeneID:21401 MGI:1196908
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003702 - RNA polymerase II transcription factor activity [Evidence IEA]; GO:0030528 - transcription regulator activity [Evidence IEA]; GO:0003746 - translation elongation factor activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006952 - defense response [Evidence IEA]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006354 - RNA elongation [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : transcription elongation factor A (SII), 3 protein_id : NP_035672.1

name	Zfp46 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:49087060 CCDS:CCDS18804.1 GeneID:22704 MGI:99192
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : zinc finger protein 46 protein_id : NP_033583.2

name	Hnrpr (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33859724 CCDS:CCDS18805.1 GeneID:74326 MGI:1891692
definition	GO_component : GO:0005634 - nucleus [Evidence IDA]; GO:0030529 - ribonucleoprotein complex [Evidence IEA] GO_function : GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] codon_start : 1 product : heterogeneous nuclear ribonucleoprotein R protein_id : NP_083147.1

name	Htr1d (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31542974 CCDS:CCDS18806.1 GeneID:15552 MGI:96276
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : G-protein coupled receptor 14 product : 5-hydroxytryptamine (serotonin) receptor 1D protein_id : NP_032335.2

name	LOC100042540 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149253175 GeneID:100042540
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001479088.1

name	Luzp1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:119433663 GeneID:269593 MGI:107629
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : leucine zipper motif-containing protein product : leucine zipper protein 1 protein_id : NP_077772.2

name	Aof2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:39930515 GeneID:99982 MGI:1196256
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0016491 - oxidoreductase activity [Evidence IEA] GO_process : GO:0016568 - chromatin modification [Evidence IEA]; GO:0006118 - electron transport [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation product : amine oxidase (flavin containing) domain 2 protein_id : NP_598633.1

name	4930549C01Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13385796 CCDS:CCDS18808.1 GeneID:67663 MGI:1914913
definition	codon_start : 1 product : hypothetical protein LOC67663 protein_id : NP_080576.1

name	BC029684 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149253148 GeneID:242707 MGI:2448566
definition	codon_start : 1 product : hypothetical protein protein_id : XP_205950.7

name	Ephb2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:47777351 CCDS:CCDS18809.1 GeneID:13844 MGI:99611
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0005887 - integral to plasma membrane [Evidence TAS]; GO:0016020 - membrane [Evidence IEA]; GO:0045202 - synapse [Evidence NAS] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0008046 - axon guidance receptor activity [Evidence IDA]; GO:0005003 - ephrin receptor activity [Evidence IDA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004713 - protein-tyrosine kinase activity [Evidence IEA] [Evidence IDA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0005102 - receptor binding [Evidence IDA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0005005 - transmembrane-ephrin receptor activity [Evidence TAS] GO_process : GO:0007411 - axon guidance [Evidence IDA]; GO:0007612 - learning [Evidence IMP]; GO:0009887 - organ morphogenesis [Evidence IMP]; GO:0048170 - positive regulation of long-term neuronal synaptic plasticity [Evidence IMP]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA]; GO:0050770 - regulation of axonogenesis [Evidence IDA]; GO:0048168 - regulation of neuronal synaptic plasticity [Evidence IMP]; GO:0007169 - transmembrane receptor protein tyrosine kinase signaling pathway [Evidence IDA] codon_start : 1 product : Eph receptor B2 protein_id : NP_034272.1

name	C1qb (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753220 CCDS:CCDS18810.1 GeneID:12260 MGI:88224
definition	GO_component : GO:0005737 - cytoplasm [Evidence IEA] GO_process : GO:0006956 - complement activation [Evidence IEA]; GO:0006958 - complement activation, classical pathway [Evidence IEA]; GO:0006955 - immune response [Evidence IEA]; GO:0045087 - innate immune response [Evidence IEA]; GO:0006817 - phosphate transport [Evidence IEA] codon_start : 1 product : complement component 1, q subcomponent, B chain protein_id : NP_033907.1

name	C1qc (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:113680120 CCDS:CCDS18811.1 GeneID:12262 MGI:88225
definition	GO_component : GO:0005737 - cytoplasm [Evidence IEA] GO_process : GO:0006956 - complement activation [Evidence IEA]; GO:0006958 - complement activation, classical pathway [Evidence IEA]; GO:0006955 - immune response [Evidence IEA]; GO:0045087 - innate immune response [Evidence IEA]; GO:0006817 - phosphate transport [Evidence IEA] codon_start : 1 note : complement component 1, q subcomponent, c polypeptide product : complement component 1, q subcomponent, gamma polypeptide protein_id : NP_031600.2

name	C1qa (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124286805 CCDS:CCDS18812.1 GeneID:12259 MGI:88223
definition	GO_component : GO:0005737 - cytoplasm [Evidence IEA] GO_process : GO:0006956 - complement activation [Evidence IEA]; GO:0006958 - complement activation, classical pathway [Evidence IMP]; GO:0006955 - immune response [Evidence IEA]; GO:0045087 - innate immune response [Evidence IEA]; GO:0006817 - phosphate transport [Evidence IEA] codon_start : 1 product : complement component 1, q subcomponent, A chain protein_id : NP_031598.2

name	Epha8 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679663 CCDS:CCDS18813.1 GeneID:13842 MGI:109378
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0005003 - ephrin receptor activity [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004713 - protein-tyrosine kinase activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006468 - protein amino acid phosphorylation [Evidence IEA]; GO:0007169 - transmembrane receptor protein tyrosine kinase signaling pathway [Evidence IEA] codon_start : 1 exception : mismatches in translation product : Eph receptor A8 protein_id : NP_031965.1

name	Zbtb40 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:38016187 CCDS:CCDS18814.1 GeneID:230848 MGI:2682254
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 product : zinc finger and BTB domain containing 40 protein_id : NP_937891.1

name	Wnt4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678595 CCDS:CCDS18815.1 GeneID:22417 MGI:98957
definition	GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0005102 - receptor binding [Evidence TAS]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0030154 - cell differentiation [Evidence IMP]; GO:0007267 - cell-cell signaling [Evidence TAS]; GO:0007275 - development [Evidence IEA]; GO:0001838 - embryonic epithelial tube formation [Evidence IDA]; GO:0008585 - female gonad development [Evidence IMP]; GO:0007223 - frizzled-2 signaling pathway [Evidence IEA]; GO:0007276 - gametogenesis [Evidence IGI]; GO:0042445 - hormone metabolism [Evidence IMP]; GO:0008584 - male gonad development [Evidence IMP]; GO:0045596 - negative regulation of cell differentiation [Evidence IMP]; GO:0048599 - oocyte development [Evidence IMP]; GO:0009887 - organ morphogenesis [Evidence IMP] [Evidence TAS]; GO:0007548 - sex differentiation [Evidence IMP]; GO:0007165 - signal transduction [Evidence TAS]; GO:0051145 - smooth muscle cell differentiation [Evidence IMP] [Evidence IDA]; GO:0035239 - tube morphogenesis [Evidence IMP]; GO:0016055 - Wnt receptor signaling pathway [Evidence IEA] codon_start : 1 note : signal molecule product : wingless-related MMTV integration site 4 protein_id : NP_033549.1

name	Cdc42 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753364 CCDS:CCDS18816.1 GeneID:12540 MGI:106211
definition	GO_component : GO:0042995 - cell projection [Evidence IDA]; GO:0005622 - intracellular [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0030742 - GTP-dependent protein binding [Evidence IPI]; GO:0003924 - GTPase activity [Evidence ISS] [Evidence TAS] [Evidence NAS] [Evidence IDA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0051301 - cell division [Evidence IEA]; GO:0046847 - filopodium formation [Evidence IDA]; GO:0007097 - nuclear migration [Evidence IMP]; GO:0043552 - positive regulation of phosphoinositide 3-kinase activity [Evidence IMP]; GO:0007266 - Rho protein signal transduction [Evidence TAS] citation : [PUBMED 8817303] codon_start : 1 function : GTP-binding protein product : cell division cycle 42 homolog protein_id : NP_033991.1

name	LOC665287 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665287
definition	number : 2 pseudo : _no_value

name	LOC665287 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665287
definition	number : 1 pseudo : _no_value

name	1700029M20Rik (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:73937
definition	number : 1

name	1700029M20Rik (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:73937
definition	number : 2

name	1700029M20Rik (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:73937
definition	number : 3

name	LOC669445 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:669445
definition	number : 1 pseudo : _no_value

name	LOC665334 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149253173 GeneID:665334
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 ESTs, 2 Proteins product : similar to RNA polymerase II elongation factor pseudo : _no_value transcript_id : XR_001716.2

name	LOC667080 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149253176 GeneID:667080
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 3 Proteins product : similar to ribosomal protein pseudo : _no_value transcript_id : XR_035693.1

name	LOC433770 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149253146 GeneID:433770
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 23 ESTs, 23 Proteins product : similar to heterogeneous nuclear ribonucleoprotein A3 pseudo : _no_value transcript_id : XR_031848.1

clone name	MSMg01-333A15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-520H09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-499A11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-412C07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-266M08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-424J11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-181F11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-417M20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-098K10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-424P12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-159K23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-400M10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-481B01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-272G21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-419G06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-341N16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-309L19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-296M15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-296M15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-333A08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-184G10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-388C06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-468A23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-109K21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-308I13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-487A22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-146N07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-475E05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-309J18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-506F10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-524H09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-114A13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-358O23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-430B12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-430J12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-329O19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-126G10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-342C24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-348L21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-291J21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-062C10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-090I23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-305D19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-054K09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-353D07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-466O05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-456B21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-268K15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-458I09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-344C11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-464F06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-469N20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-471D19
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-237O23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-408L17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-450C21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-271I06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-348M07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-467G08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-374D20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-378A17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-137J11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-082A17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-081L15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-439A15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-182P03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-067B07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-078A16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-069K23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-334I07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-474A13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-110I17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-405P22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-307A02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-487N08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-057M11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-205K20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-205K22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-182J07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-506I04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-349B10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-435P12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-214O17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-521O04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-518M21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-524N17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-329N19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-404D18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-351C20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-375K15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-185O05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-306D02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-036D07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-125E20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-163A15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-193C13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-151F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-109F24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-057J18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-286K03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-236F07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-037I16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-217O03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260G02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-324H24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-328M18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228M02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-077J21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-324H15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-197O15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-295P15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-153M20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-320H04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-011L09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-183C16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-083D04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-114M17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-302E23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-023I02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-010I03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-042F13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-035J05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-053H11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-275C05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-331E08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-202N09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-101G06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-268O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-301P16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-187M09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-166E08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-045M11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-054P24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-009H08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-214H23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-136O08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-298C08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-134I13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-196D23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-293O03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-029A22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-028A22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113A20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-082F20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-061N15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-283E23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-187C14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-119O06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216E06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-100N05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-310K20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-202P12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161P04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-128N07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-348E13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-009I15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-293L11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-041B20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-025F19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-275C01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-183K19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323A13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228I13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-134J24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-041O16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-111G07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-088P23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-029N16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-109I21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-079D21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260G07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077D23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-010B12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-229M24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112B15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291I06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-084E23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-093I08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237O23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-030K19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-207M19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077D04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-264A24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-222L15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-256G16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152I07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-281E09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-243O22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-104C05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-060H18
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-271I06.T7 (MSMg01no271_i06.b1)	MSMg01-271I06.TJ (MSMg01no271_i06.g1)
ACC	AG411046	AG411047
length	747	738
length of high quality (start - end)	120 (45 - 164)	661 (72 - 732)
definition	CHROMAT_FILE: MSMg01no271_i06.b1 PHD_FILE: MSMg01no271_i06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:24 2005	CHROMAT_FILE: MSMg01no271_i06.g1 PHD_FILE: MSMg01no271_i06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:24 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA ATTCCACCTGTTGTTCTTAACATGCACCAGGCCCTGGCTAGGAGGCTTGT GCTGGTTTAGACAGAAGCACTAGTACAGGTCAACGTGTGCTTATCAAGTG TGGCTGTGGGGGTGGGGGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXATAACATCTCCTGATCCAACACCCCCACATACC AGAAACCTGCCCCACCTAACTACCCTCCAAAAACAAATCTCCTTTCG	ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXCAAATTCAATCGTAATACAAGTCTAACAA GTTATATTTAAGCAATAATTTTCAAAGAAATCCAAAACAAGGATGTTTTT CAAAGGAATCATTTTAGGAAACAAGACTCTCTTCTTTTCATATAATCAAG ACTCAAAACCTTTGAAACACCACTTGTAGGATTCTCAAAGGCAAGCCTCA CACATAAAGAAACCCCATTCTTCTCTTCACCTTTTAGAATTACATGGCTT CTCATTTGAGACCAAAAACAATTAATCACTCACTTCACTCGACAGACTTG CCTAACTGCCAAAGGTTAAACATAAACCTCTTAAAAATGAAGATTTATCA GGTTTAGGAAATGTACAACATGCTCTGAAAACAAATTCAAAGAAAGTACA ACAGCCCTTCCTTACATACAGGATATTCATCCCAAGACCCTAAGGGATAC CTGAAAGCTGAGGTAAGAAACTTGGATATACTATGTGTTGTGCTATACAA ATCTATGATACAGCTTAACTTATAAATTAGGCACATAAGGAGATTAATAG GAAATTGGATAATTAAAATATTGTAATAAAACTTTTGAAGGCAAAAAATG AGAGGGAAATAAAATTTTAAAATGTCAGGCATAATGGTATACATCTGTAA TCTCAGAACTTAGAAGGCTAAGGCAGGAAGATCGTGAG
quality values	Open. Hide. 9 9 9 9 9 12 22 30 26 30 28 29 23 24 32 37 34 34 30 21 21 19 19 30 22 19 28 28 24 34 28 43 48 48 48 48 57 57 59 27 27 15 23 23 24 23 28 23 42 42 29 27 47 47 47 47 47 42 46 43 43 43 39 39 35 39 39 43 48 48 50 50 50 47 57 57 30 30 14 12 12 20 32 38 36 36 23 23 32 32 25 25 23 24 24 28 32 42 33 33 33 32 32 27 27 20 24 32 12 12 12 32 26 40 32 23 20 22 32 30 30 20 20 23 36 44 43 43 44 37 37 43 44 43 43 46 43 46 43 46 43 43 43 43 33 37 32 42 47 43 33 23 23 20 28 24 28 26 28 25 24 18 15 15 11 12 18 18 19 11 16 15 12 19 15 9 8 10 15 10 9 9 9 9 14 16 31 31 36 34 37 23 32 23 28 32 39 35 35 35 39 37 28 25 13 13 28 28 12 13 9 9 9 7 8 11 22 22 25 30 21 30 28 28 28 32 34 19 18 12 18 11 9 9 16 12 11 18 12 23 23 23 24 12 13 18 26 14 13 12 22 12 26 26 42 40 30 25 25 25 36 36 43 47 34 32 19 19 11 12 12 15 15 15 18 11 20 20 21 24 15 21 23 30 19 19 19 24 28 39 24 24 12 12 12 20 9 11 16 23 25 22 23 22 11 11 12 15 19 24 22 15 21 9 9 9 13 10 10 10 10 19 18 16 11 12 19 23 22 9 9 9 9 17 19 25 12 11 11 9 9 8 8 8 8 8 8 11 11 11 11 3 0 3 10 8 8 8 6 6 6 6 6 6 6 6 6 6 6 11 9 9 7 8 6 6 6 7 7 10 17 16 15 10 3 0 3 15 3 0 3 11 11 15 8 8 7 13 15 19 10 9 9 9 21 23 17 14 16 16 11 15 18 18 16 10 10 10 10 13 21 16 14 19 14 15 15 19 13 12 10 9 13 10 11 8 6 6 6 11 10 10 8 8 8 8 12 12 11 11 11 19 19 16 9 9 9 9 9 19 24 37 36 18 21 11 11 9 15 15 15 12 12 8 8 8 8 10 10 13 9 8 8 6 8 8 8 10 8 9 9 12 18 22 11 11 9 10 10 10 9 18 18 19 10 10 6 6 10 8 9 9 9 9 9 9 11 11 11 16 12 15 10 13 14 12 10 10 13 16 20 19 17 9 9 9 10 10 19 19 10 10 9 12 12 11 10 9 9 9 9 9 11 11 11 22 18 17 17 11 8 8 8 17 18 12 14 11 16 19 30 18 22 12 16 16 18 12 9 9 9 14 17 16 11 14 15 26 22 26 12 12 8 8 8 8 8 8 17 12 11 7 7 8 10 8 8 11 10 10 8 8 12 9 9 11 22 15 15 15 8 8 8 10 10 8 10 10 16 16 10 10 8 17 11 8 8 8 10 9 10 9 9 9 9 9 11 11 12 11 22 20 25 12 12 9 9 7 8 9 13 14 18 19 8 8 6 6 10 10 14 13 15 8 8 10 10 8 8 8 9 13 12 13 13 9 12 9 9 10 10 12 9 9 9 10 10 10 16 12 9 9 8 10 6 6 6 8 9 8 8 7 7 9 7 12 7 6 8 8 8 6 7 10 8 9 10 10 9 10 9 9 10 9 8 8 8 8 8 8 8 8 8 8 8 7 7	Open. Hide. 10 10 10 10 15 12 26 18 19 22 30 34 47 41 42 42 41 39 39 39 39 39 39 39 39 28 25 9 8 7 8 8 8 19 15 21 21 33 29 43 43 48 53 53 38 36 36 36 36 36 50 50 50 50 47 37 31 16 18 10 10 10 11 12 23 21 33 33 33 31 32 35 36 36 35 38 38 37 37 37 47 59 59 53 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 54 54 46 44 24 24 11 11 11 18 24 44 57 68 68 68 68 68 68 68 68 68 68 68 51 51 51 51 51 51 68 68 68 68 68 68 68 68 68 68 51 51 50 50 50 51 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 43 43 43 43 52 52 45 45 52 62 62 62 52 52 52 52 62 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 57 57 57 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 59 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 59 59 59 59 59 59 59 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 57 57 57 59 59 48 59 59 59 57 57 50 50 50 53 57 57 59 59 59 59 59 50 50 50 42 41 39 44 44 39 39 44 44 44 47 47 50 50 50 48 48 48 48 48 48 48 59 59 50 50 50 50 50 37 37 37 37 37 32 37 39 39 39 41 42 50 50 50 50 48 59 57 57 57 57 57 57 57 59 59 57 48 48 43 43 35 35 35 59 59 59 59 59 59 57 57 57 57 59 57 57 59 59 46 46 46 57 59 57 57 57 43 43 40 40 43 59 59 59 41 41 41 41 41 41 37 37 41 41 41 41 41 41 41 59 59 41 41 41 37 31 35 39 44 59 59 41 41 37 26 34 23 34 34 40 40 40 39 43 48 48 48 40 41 42 41 41 41 41 37 37 41 30 30 14 14 14 27 27 28 32 32 29 23 25 22 28 28 32 32 39 20 24 16 14 15 22 24 21 25 21

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no271_i06.b1 MSMg01no271_i06.b1 CHROMAT_FILE:
MSMg01no271_i06.b1 PHD_FILE: MSMg01no271_i06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:24 2005
         (120 letters)



>mm_chr4_135938636_135939155
          Length = 520

 Score =  194 bits (100), Expect = 2e-54
 Identities = 112/116 (96%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccacctgttgttcttaacatgcaccaggccctggctaggaggcttgtgctggttt 64
           ||||||||||||| |||| |||||||| |||||||||||||||||||||||||| |||||
Sbjct: 205 gaattccacctgtcgttcctaacatgcgccaggccctggctaggaggcttgtgcgggttt 264

                                                                   
Query: 65  agacagaagcactagtacaggtcaacgtgtgcttatcaagtgtggctgtgggggtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agacagaagcactagtacaggtcaacgtgtgcttatcaagtgtggctgtgggggtg 320


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 2
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 120
Length of database: 520
Length adjustment: 8
Effective length of query: 112
Effective length of database: 512
Effective search space:    57344
Effective search space used:    57344
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information