BAC Information

Click to search

BAC

Clone NameMSMg01-271I16
Chromosome4 (Build37)
Map Location 37,320,406 - 37,320,721
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042132, LOC545600, LOC621458
Downstream geneLOC277771, LOC100039448
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-271I16.T7 (MSMg01no271_i16.b1)MSMg01-271I16.TJ (MSMg01no271_i16.g1)
ACCAG411065AG411066
length736754
length of high quality
(start - end)
313 (44 - 356)632 (68 - 699)
definitionCHROMAT_FILE: MSMg01no271_i16.b1 PHD_FILE: MSMg01no271_i16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:26 2005CHROMAT_FILE: MSMg01no271_i16.g1 PHD_FILE: MSMg01no271_i16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGAAATACAAAAATATTCAGACCTCTTTCCCCCTGTAAGAGCCCGAA
CTTACTTACCATACTAAGGTCACTTGATATGGCTATGAAGCATTGAGCCA
CACTGGTTGGAGGGTTCATAACATGACCAAAGGTGTAGCAATTTCATTGA
GAACTGTCACACTTTTTATTATCTTTATCAGTGACAGAATATAATGGTAA
TTTTTATGATCATGCAGTAATAGTTACCATATTAGAGCCAACAAAGTATC
CGAGACTGAAGTATATATATTCTATAAGTAGAAAGCAAAGAATGCAACTT
TTTTCTCTATTGAGAACCCCCCTACCAAATATTAAGTAGTCTAAGCAATA
CATTATTTAAATCTGAAGTGAGATAAGACATTTATAACATATATTGTAAA
CTATGGAATAAGACTGTATATATGTAAACATCAATTTATCATTACATAAA
AGTGGTCATTTTCTCTTTAAAGTATAAAAAGTATGGGGCTAAGGAGATGG
CTCAGTGATGGAGAGTACATACTACTCTTGCAGAGGACAGGAGCTTATAA
CTAAGCATCTAACTTGCTGCCCATAGCTGCATCTGCTGGAAGATTTACTG
CTTCTGCCCTGCCCTCCCCCAGCTCCTGCATTCAAATGTACACCCTCAAC
ACTAACATATATATAATGATGTATAATATAATTCAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCAC
CTGAAAAAATGTTCAACACCCTTAATCATCAGGGAAATGCAAATCAAAAC
AACCCTAAGATTCCACCTCACACCAGTCAGAATGTCTAAGATCAAAAATT
CAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTC
CATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCCGTCTG
GCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATAC
CTCTCCTGGGCATATATCCAGAACATGCCCCAACTGGTAAGAAGGACACA
TGCTCCACTATGCTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAA
AGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACA
TCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAA
TTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAAC
ACATTCACAAAGAAACTCACACAATATGTACTCACTGATAAGTGGATATT
AGCCCAAAACCTAGGATACCCAAGATATAAGTTACAATTTCCTAAACACA
TGAAACTCAAGAAAAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTT
GGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no271_i16.b1 MSMg01no271_i16.b1 CHROMAT_FILE:
MSMg01no271_i16.b1 PHD_FILE: MSMg01no271_i16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:26 2005
         (313 letters)



>mm_chr4_37320217_37320930
          Length = 714

 Score =  545 bits (282), Expect = e-159
 Identities = 305/316 (96%), Gaps = 7/316 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagaaatacaaaaatattcagacctctttccccctgtaagagcccgaacttactt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gaattcagaaatacaaaaatattcagacctctttccccctgtaagagcccgaacttactt 446

                                                                       
Query: 65  accatactaaggtcacttgatatggctatgaagcattgagccacactggttggagggttc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 accatactaaggtcacttgatatggctatgaagcattgagccacactggttggagggttc 386

                                                                       
Query: 125 ataacatgaccaaaggtgtagcaatttcattgagaactgtcacactttttattatcttta 184
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 385 ataacatgaccaaaggtgtagcaatttcattgataactgtcacactttttattatcttta 326

                                                                       
Query: 185 tcagtgacagaatataatggtaatttttatgatca-tgcagtaatagttaccatattaga 243
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 325 tcagtgacagaatataatggtaatttttatgatcagtgcagtaatagttaccatattaga 266

                                                                       
Query: 244 gccaacaaagtatccgagactgaagtatatatattctataagtagaaagcaaagaatgc- 302
           |||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||| 
Sbjct: 265 gccaacaaagaatctgagactgaagtatatatactctataagtagaaagcaaagaatgca 206

                           
Query: 303 -----aacttttttct 313
                |||||||||||
Sbjct: 205 attaaaacttttttct 190


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 714
Length adjustment: 9
Effective length of query: 304
Effective length of database: 705
Effective search space:   214320
Effective search space used:   214320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)