BAC Information

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BAC

Clone NameMSMg01-271O13
Chromosome4 (Build37)
Map Location 115,898,333 - 115,898,687
singlet/doubletsinglet
Overlap genePik3r3
Upstream geneLOC384042, LOC230639, Cyp4a12, LOC546842, Cyp4a12b, LOC435802, LOC666393, LOC230641, Cyp4a14, Cyp4a10, LOC666168, LOC631037, LOC100040843, Cyp4b1, LOC546843, 4732418C07Rik, 4930544O15Rik, Atpaf1, Mobkl2c, Mknk1, Kncn, 6430628N08Rik, Dmbx1, Faah, Nsun4, Uqcrh, Lrrc41, Rad54l, 1520402A15Rik, Pomgnt1, Tspan1, 1700042G07Rik, LOC433748
Downstream geneMast2, LOC631400, Ipp, Tmem69, Gpbp1l1, LOC622665, Nasp, Akr1a4, Prdx1, Mmachc, 0610037D15Rik, Tesk2, Toe1, Mutyh, Hpdl, LOC625336, LOC100041048, Zswim5, Urod, Hectd3, Eif2b3, Ptch2, 9530048O09Rik, LOC100041324, 4833401D15Rik, Plk3, Best4-ps, LOC625405, Rps8, Kif2c, Gm1661
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-271O13.T7 (MSMg01no271_o13.b1)MSMg01-271O13.TJ (MSMg01no271_o13.g1)
ACCAG411332AG411333
length752753
length of high quality
(start - end)
307 (43 - 349)355 (367 - 721)
definitionCHROMAT_FILE: MSMg01no271_o13.b1 PHD_FILE: MSMg01no271_o13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:54 2005CHROMAT_FILE: MSMg01no271_o13.g1 PHD_FILE: MSMg01no271_o13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCTCCTCAGTCATACAGACCCCTGGAGACCTTAACCCCCTTCACTTTT
TTCTCCTCTTTCTTTTCTCCCTTTCTCTTTCTCTTTTTCTATTCAATCCT
CACCTGTGCCCACCCCCCACCCCCGCCCCCTGCCTCCCACCCTAAGGTCT
CATTATATAGCCCCAGCTGACCTAGAACTCACAATGTAGTCCAGACTGGC
CTGAAAATCAGAGATCTTCCCATGTCTGCCTCTCAAACTCTGAGATTAAA
AGCATGCACCATGCCTGGTTTCTTTTTAAAATGAATAAATGGAATAGNAT
TGGTTTATTTTTTTTCACCCCCCCCCCCACCTATTTAAATTTATGTGTAT
GTGTGTGCCCGACCCCCTGGAAAAAAAAAAAATGTGTGCAGGAGGCCAGG
GAAGTCAGAAGAGGCATCACTTCCCCTGGCAGTGGGGTAACAGACGGATG
TGAGAAGCCATGTGGAAACTGGGAACCAGAACTGGTCCTCTGCAAGAGCA
AATAGAGCTCTTAACTGCTGAGACACCTCTCCGGACACCTTTTTCTCTCT
GAGAAAAGGGCATCCTATGTTGCCCAGGATAGCACCGAAGAAAAACCCAG
AGTCCTATGCCCAAGCTAATCTACTGGCGGAGCTTCTAAAATACCAAAGG
ATAAGTCGGACGAATCCGCACTCTAAAAAAGGCGGAAGATAGACAATAAT
CG
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCTACACAGAGAAACCAT
GACTTGAAAAAACGAACCCCAAAGAAAAAAGAAAAAAAGAAAATGATGAA
ATGAACAATAGTTATTGAAAAGAAAGATAAGTTAGAGGGAAAGATCTTTG
GAAGATAGTTTTTAAGGCAATAACAGGTTTTAAAACTTATGATATTTATA
GTCAGACTAAAGTCAACCTATAAATAATACACAAAAATATTAATAATATT
CCAATTAAGGGCCCAAATAAATAAACTAACTCCAAAGCTAGGCTATTACA
ATAGCCAAGGAGTGAGGTGACCAAGGACTTTAAGCAAAAAACACCTAAAC
TTAGAAAGAAACACGGACACTTAGTTACCTATAACATATATTGATTAAAT
TGCCTACTACTTCCAAAACTCTAAACAAGCTAAGAAACTTCCAACCAAGC
AGGAACACAATTCCATCAGGCAAAATACTCATAAATAAATGCAGCAGCCA
CTATAAACATGATAAGGAAATTCCATCTAAGAAGTACTCTAAAAAAAGAA
AGAAAAAGAAAAGGGAAGAATATCTTCTAACAAAGGGTATCAGAGAATAT
ATTCTGGGGGGAAAATGCATCTGATAATGAGTTCAAAACATATATAACAT
TTTGACAAGTGACCATTACAAGTGATTTAAAAAAAAAAGTGTAAAGTAAC
AAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no271_o13.g1 MSMg01no271_o13.g1 CHROMAT_FILE:
MSMg01no271_o13.g1 PHD_FILE: MSMg01no271_o13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:54 2005
         (355 letters)



>mm_chr4_115898133_115898887
          Length = 755

 Score =  679 bits (351), Expect = 0.0
 Identities = 354/355 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtgaccaaggactttaagcaaaaaacacctaaacttagaaagaaacacggacacttagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 555 gtgaccaaggactttaagcaaaaaacacctaaacttagaaagaaacagggacacttagtt 496

                                                                       
Query: 61  acctataacatatattgattaaattgcctactacttccaaaactctaaacaagctaagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 acctataacatatattgattaaattgcctactacttccaaaactctaaacaagctaagaa 436

                                                                       
Query: 121 acttccaaccaagcaggaacacaattccatcaggcaaaatactcataaataaatgcagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 acttccaaccaagcaggaacacaattccatcaggcaaaatactcataaataaatgcagca 376

                                                                       
Query: 181 gccactataaacatgataaggaaattccatctaagaagtactctaaaaaaagaaagaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gccactataaacatgataaggaaattccatctaagaagtactctaaaaaaagaaagaaaa 316

                                                                       
Query: 241 agaaaagggaagaatatcttctaacaaagggtatcagagaatatattctggggggaaaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 agaaaagggaagaatatcttctaacaaagggtatcagagaatatattctggggggaaaat 256

                                                                  
Query: 301 gcatctgataatgagttcaaaacatatataacattttgacaagtgaccattacaa 355
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 gcatctgataatgagttcaaaacatatataacattttgacaagtgaccattacaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 755
Length adjustment: 9
Effective length of query: 346
Effective length of database: 746
Effective search space:   258116
Effective search space used:   258116
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)