Query= MSMg01no272_a21.b1 MSMg01no272_a21.b1 CHROMAT_FILE:
MSMg01no272_a21.b1 PHD_FILE: MSMg01no272_a21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:05 2005
(322 letters)
>mm_chr4_111499915_111500636
Length = 722
Score = 571 bits (295), Expect = e-167
Identities = 310/315 (98%)
Strand = Plus / Minus
Query: 5 gaattctttgtatgctcacgaaccttcagttattaatattttagtttcttccactttaat 64
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gaattctttgtatgctcaggaaccttcagttattaatattttagtttcttccactttaat 365
Query: 65 tatgttcttacttaatcgtttgtacaattcaagagaatacataaaaagtgcatggtacag 124
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tatgttcttacttaattgtttgtacaattcaagagaatacataaaaagtgcatggtacag 305
Query: 125 tatttacttggaacaaagatgtggttatgatgcattgagctaaatactttctgtatgccc 184
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 304 tatttacttggaacaaagatatggatatgatgcattgagctaaatactttctgtatgccc 245
Query: 185 agcaatctcacaatatcatacatagcaagatagtaagattcaggatatcaataaaccgat 244
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 agtaatctcacaatatcatacatagcaagatagtaagattcaggatatcaataaaccgat 185
Query: 245 ctcagctgacttggaaactccccaatggctagcacacatgcataaggtactatgaaggat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 ctcagctgacttggaaactccccaatggctagcacacatgcataaggtactatgaaggat 125
Query: 305 gctgggggagaagac 319
|||||||||||||||
Sbjct: 124 gctgggggagaagac 110
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space: 223169
Effective search space used: 223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no272_a21.g1 MSMg01no272_a21.g1 CHROMAT_FILE:
MSMg01no272_a21.g1 PHD_FILE: MSMg01no272_a21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:05 2005
(550 letters)
>mm_chr4_111364839_111365788
Length = 950
Score = 1004 bits (519), Expect = 0.0
Identities = 542/555 (97%), Gaps = 10/555 (1%)
Strand = Plus / Plus
Query: 1 cagagcttggaaagtgaagcaggagaatcacaagttcaaggccagcatgggcttcatcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagagcttggaaagtgaagcaggagaatcacaagttcaaggccagcatgggcttcatcag 260
Query: 61 gagaccccaccactaccacctcaacagaaccaaagcaaacggaaacaaaggcagagctct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagaccccaccactaccacctcaacagaaccaaagcaaacggaaacaaaggcagagctct 320
Query: 121 agaaaagaagaaaaagaaaatgtgcttacaaaaattgtcaaatagagatatgatcaaata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaaaagaagaaaaagaaaatgtgcttacaaaaattgtcaaatagagatatgatcaaata 380
Query: 181 ataaatctagagactatgagaaaaaatgtatttgactggaaaattaatacatttttccag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataaatctagagactatgagaaaaaatgtatttgactggaaaattaatacatttttccag 440
Query: 241 gactttgagatcgaaaaatgaatctgtgatttatttccttgttataaatacacatacact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 gactttgagatcgaaaaatgaatctgtgatttatttccttgttataaatacacatccact 500
Query: 301 tttagagccaattttctattaatatgttccttattgtttttctaccccca-----cctcc 355
||||||| |||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 501 tttagagtcaattttctattaatatgttccttattgtttttcta-----aagggacctcc 555
Query: 356 tggggccggggagacagcagtctgaaaactgcttgttacacaagcttgaggaccaagttt 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tggggccggggagacagcagtctgaaaactgcttgttacacaagcttgaggaccaagttt 615
Query: 416 agatgtccagtacttaaaaaacaaaacaaaacaagcaaacaacaacaaagccgtgagctt 475
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 616 agatgtccagtacttaaaaaacaaaacaaaacaagcaaacaacaacaaagccctgagctt 675
Query: 476 ggcagagcaaatttgcaatcccagtgttgggagatggaaacaagaggacccttggggctt 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ggcagagcaaatttgcaatcccagtgttgggagatggaaacaagaggacccttggggctt 735
Query: 536 gcaactcagttatct 550
|||||||||||||||
Sbjct: 736 gcaactcagttatct 750
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space: 507600
Effective search space used: 507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
