BAC Information

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BAC

Clone NameMSMg01-272B12
Chromosome4 (Build37)
Map Location 95,799,534 - 95,799,848
singlet/doubletsinglet
Overlap geneLOC242546
Upstream geneLOC100042411, 2310009E04Rik, Hook1, Cyp2j13
Downstream geneLOC546837, Cyp2j11, LOC665095, Cyp2j6, Cyp2j9, Cyp2j5, LOC100039415, LOC620779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272B12.T7 (MSMg01no272_b12.b1)MSMg01-272B12.TJ (MSMg01no272_b12.g1)
ACCAG411470AG411471
length756758
length of high quality
(start - end)
719 (38 - 756)315 (435 - 749)
definitionCHROMAT_FILE: MSMg01no272_b12.b1 PHD_FILE: MSMg01no272_b12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:08 2005CHROMAT_FILE: MSMg01no272_b12.g1 PHD_FILE: MSMg01no272_b12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAATTCATT
CTTTTTTTCCGCTGAATAGTACTCCATTGTGTAAATGTACCACATTTTTT
GTATCCATTCCTCTGTTGAGGGGTATCTGGGTTCTTTCCAGCTTCTGGCT
ATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTCTTACC
GGTTGGGACATCTTCCGGATATATGCCCAGGAGAGGTATTGCGGGATCCT
CCTGTAGTACTATGTCCAATTTTCTGAGGAACCGCCAGACTGATTTCCAG
AGTGGTTGTACAAGCTTGCTATCCCACCAACAATGGAGGAGTGTTCCTCT
TTCTCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAG
CCATTCTGACTGGTGTGAGATGGAATCTCAGGGTTGTTTTGATTTGCATT
TCCCTGATGATTAAGGATGTTGAACATTTTTTCAGGTGTTTCTCAGCCTT
TCGGTATTCCTCTGGTGAGAATTCTTTGTTCAGCTCTGAGCCCCATCTTT
TAAGGGGGCTATTTGATTTTCTGGAGTCCACCCTCTTGAGTTCTTTATAT
ATATTGGATATTAGTCCCCTATCTGATTTAAGATAGGTAAAGATCCTTTC
CCAATCTGTTGGTGGTCTTTTTGTCTTATTAACGGTGTCTTTTGCCTTGC
AGAAGCTTTGCAGTTTCATGAGGTTCCATTTGTCAATTCTCGATCTTAAA
GCACAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCAGGCCAGGACAGCCAGGGCAATACAGAGAAAC
CCTGTCTCGAAAAAACCAAAAAAGAAAAAAAAGAAGAAGAAGAAGAAGAT
CTTGCTTATTTGTTGACCCTTATGTCCTTGTACATTCTTTTAGAGACTCA
CTTAATTCATACTCACTTATATCAATGTTTCATAGATTCATTTTAATTGA
ATTTCAATTTAGTTCAGAGGAGGAAAGAAAAATCTTCAGAAACACTTCCA
CATACTGAAGTACATCCGTTCATTCATATTAACAGATACACCTCTAAACA
CTAGTCTGTCTTTTTATCACCCANACCCGCCATCCACTGACACATTAACA
CAGTCATACTCTAACTATTGAAATGATTTTACAGTTTGTGAAGAAGTATG
GAAACCTAACTAGCCTGGACTTTGGTAATATTCCTTCAGTAATAATAACT
GGACTGCCCTTGATCAAAGAAGTCTTCACTAACATGGAACAAAACTTTTT
GAATCGTCCTGTTACACCTATCAGAAAACGTGTCTTTAATAACAATGGTA
AGTTTAATTGGCGGCACTATTGACTTCAGTGGGTTATTTAAAACAAACAA
ACAAAAACTCTGCATGAATTTGGATGGAAAATGGAACACAGGTCTGGAAA
AGTTTCATGAAGAGCTGAAGGGAGAGAGCAGGAAAAAGGATATAACCAAG
ATATATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_b12.g1 MSMg01no272_b12.g1 CHROMAT_FILE:
MSMg01no272_b12.g1 PHD_FILE: MSMg01no272_b12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:08 2005
         (315 letters)



>mm_chr4_95799334_95800048
          Length = 715

 Score =  586 bits (303), Expect = e-172
 Identities = 312/315 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgtgaagaagtatggaaacctaactagcctggactttggtaatattccttcagtaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tttgtgaagaagtatggaaacctaactagcctggactttggtaatattccttcagtaata 456

                                                                       
Query: 61  ataactggactgcccttgatcaaagaagtcttcactaacatggaacaaaactttttgaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ataactggactgcccttgatcaaagaagtcttcactaacatggaacaaaactttttgaat 396

                                                                       
Query: 121 cgtcctgttacacctatcagaaaacgtgtctttaataacaatggtaagtttaattggcgg 180
           |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 395 cgtcctattacacctatcagaaaacgtgtctttaataacaatggtaagtttaattggcag 336

                                                                       
Query: 181 cactattgacttcagtgggttatttaaaacaaacaaacaaaaactctgcatgaatttgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 cactattgacttcagtgggttatttaaaacaaacaaacaaaaactctgcatgaatttgga 276

                                                                       
Query: 241 tggaaaatggaacacaggtctggaaaagtttcatgaagagctgaagggagagagcaggaa 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 275 tggaaaatggaacacaggtctggaaaagtttcatgaagagctgaagggagagagtaggaa 216

                          
Query: 301 aaaggatataaccaa 315
           |||||||||||||||
Sbjct: 215 aaaggatataaccaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)