Query= MSMg01no272_g21.b1 MSMg01no272_g21.b1 CHROMAT_FILE:
MSMg01no272_g21.b1 PHD_FILE: MSMg01no272_g21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:35 2005
(321 letters)
>mm_chr4_135142651_135143375
Length = 725
Score = 536 bits (277), Expect = e-157
Identities = 309/321 (96%), Gaps = 4/321 (1%)
Strand = Plus / Plus
Query: 5 gaattctatgatgtgaactatgtctcaagaccaaaaaaaaaaaaa---tgcagagttaat 61
||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 205 gaattttatgatgtgaattatgtctcaagaccaaaaaaaaaaaaatgctgcagagttaat 264
Query: 62 actgccaaagcaataaagccgcgatatgcctatttgacttacaaatttaaatgtaaattc 121
|||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct: 265 actgccaaagcaataaagttgcgatatgcctatttgacttacaaatttaaatgtgaattc 324
Query: 122 ttcaagaaaaaagtgagattca-gtacaaatacaatacaataagcacaacaccaagtgag 180
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 325 ttcaagaaaaaagtgagattcaggtacaaatacaatacaataagcacaacgccaagtgag 384
Query: 181 agccacctgtggccagaggctcctgtacagcatagcagagctccgaggttctgagtggcc 240
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 385 agccacctgtggccagaggctcctgtacagcatagcagagctctgtggttctgagtggcc 444
Query: 241 atccccgggcaaatccccaggactcaggaaacaggctggcactaggaccaaggcagggag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atccccgggcaaatccccaggactcaggaaacaggctggcactaggaccaaggcagggag 504
Query: 301 tgaagctgcttttcaaagacc 321
|||||||||||||||||||||
Sbjct: 505 tgaagctgcttttcaaagacc 525
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 725
Length adjustment: 9
Effective length of query: 312
Effective length of database: 716
Effective search space: 223392
Effective search space used: 223392
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no272_g21.g1 MSMg01no272_g21.g1 CHROMAT_FILE:
MSMg01no272_g21.g1 PHD_FILE: MSMg01no272_g21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:35 2005
(304 letters)
>mm_chr4_135342092_135342795
Length = 704
Score = 507 bits (262), Expect = e-148
Identities = 268/270 (99%)
Strand = Plus / Minus
Query: 35 cacaggtcagctagcctggtgcatacagcagtgaacatgagagttagcctggtgcacaca 94
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 cacaggtcagctagcctggtgcatacagcagtgaacatgagagttagcctggtgcacaca 283
Query: 95 gcagtgaacaagagagctagcctggtgtacacagcagtgaacaagagagctagcctgctg 154
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 gcagtgaacaagagcgctagcctggtgtacacagcagtgaacaagagagctagcctgctg 223
Query: 155 tacacaggtcagctagcctggtgcatacagcagtgaacatgagagttagcctggtgcaca 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 tacacaggtcagctagcctggtgcatacagcagtgaacatgagagttagcctggtgcaca 163
Query: 215 aagcagtgaacaagagagctagcctggtgtacacagcagtgaacaagagaccctgtgtca 274
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 cagcagtgaacaagagagctagcctggtgtacacagcagtgaacaagagaccctgtgtca 103
Query: 275 aatgagttggaagatgaggaccgacattaa 304
||||||||||||||||||||||||||||||
Sbjct: 102 aatgagttggaagatgaggaccgacattaa 73
Score = 495 bits (256), Expect = e-144
Identities = 262/264 (99%)
Strand = Plus / Minus
Query: 1 caggatggggagcaaggtaggagaatccggggctcacaggtcagctagcctggtgcatac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 caggatggggagcaaggtaggagaatccggggctcacaggtcagctagcctggtgcatac 439
Query: 61 agcagtgaacatgagagttagcctggtgcacacagcagtgaacaagagagctagcctggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 agcagtgaacatgagagttagcctggtgcacacagcagtgaacaagagagctagcctggt 379
Query: 121 gtacacagcagtgaacaagagagctagcctgctgtacacaggtcagctagcctggtgcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gtacacagcagtgaacaagagagctagcctgctgtacacaggtcagctagcctggtgcat 319
Query: 181 acagcagtgaacatgagagttagcctggtgcacaaagcagtgaacaagagagctagcctg 240
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 318 acagcagtgaacatgagagttagcctggtgcacacagcagtgaacaagagcgctagcctg 259
Query: 241 gtgtacacagcagtgaacaagaga 264
||||||||||||||||||||||||
Sbjct: 258 gtgtacacagcagtgaacaagaga 235
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 9
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 5
Length of query: 304
Length of database: 704
Length adjustment: 9
Effective length of query: 295
Effective length of database: 695
Effective search space: 205025
Effective search space used: 205025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
