AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCTCAGTCTCCCATGTGTATCAATGTTATTCTTCTTTGGTTCATGCT
TGAGTGTCTCAGCATTTCCTATAAAAAATTTAAAACATTAAAAATTATAG
AAGTAACTGTTAAAGGTCTTCTACACCAACAATGAGTTTTCTACAAGCTT
AGAAAACCTATGAAATTACCCAAGTGACATGTAGTAATAGCATAAGCCAG
GAGACAATTCTGAAATAGACACATAGGGATTGATGGTTGGAAAAAACCTC
AACAACTGACAGTAATTGCCTAAAGTTCCTTTCTTGATAGTCTAGTATTA
AATTGGTTTTCCCCTCTGAATTATTTTACTAAAATTCTGCCTAATTCTTA
AAAATAAAACATAAAAAGCTAGTATGCCATAAGTTACACAACAGATACAG
AAAAATATTATAAAACAGCCTTGAATTAGATCAATCCATCCTGGCCTCTA
TACTATGACAAGATTAATAGATTACAACTGACATCTACCAACAATAAAAA
GCCATTATGAAAAGCAGATACCAGTTCAACGGCTTACCTGTTAAACAAAA
TTAGGCCACAGCTCAAAAAGTATTAGAAAACCATTCCTGAGTGTCTCTTG
ATAAATGGAAACATCAGGTTGGGGTGCAGACTTTACAATCAGATAAAGAG
ATACTCAAACCCCCATCAAATATTTATGACCN

NCCCCCNTTCCTTCCCTTTTTNTGNNNNNNGGGGCCGATTAACTAGTGGG
GGTTAGGGCCCCTGGGGCCGGGNCCCGNCCCTTGTGGCCCGTTTCGGAAA
CATTTTTTTAAAGGGGTGGAAACCCCCTTTAATTAGGAAAAAGGGGAAAT
TCCCGGGGCGGGGGAAAAAAATTTTTTCCCCAAACCCCACCCCCCCAAAA
AAAGTGGGGAATTGGGTGGGAAAACCCCTGGGGGATAAACCTGGGTTTTT
GGGGCTGGGGAAACCCGGAAAAAAGAGAAAGGGTTTTTTTTTCCGGGGGG
GGGGGGGGAAGGGGGGTAAAAAAAAAAACCCCCCCACAAAAAAAAAAAAA
AGGGGGGGGGAAAATATTTTCTCAAAAAAAAACCCTTTGGGGGGGGGGGG
GGGGGTCCCCCTTTGGGGGAAAAAAAAAAAAAGGGGGGGGTTTTTTTTTT
TTCTCCCGCGGGGGGGGGGGGGGGGGGGGGGGAAAAAAATAAAAAAAAAC
ACCCCCCCCCCTCTCCGCAGTCTCTCCTCTCGGAGGGGGGGGGTGATAAA
TAAATTATTTTTTTTTTTTTCTTGTGTGGGGGGGGGGGGGGAAAAAAAAA
AAATAATATTATTTTTTTTATTATTTCTCTCTGTGGGGGGCGGTCCCCCT
TGCGCGGGGGTATTCTTATATTATAAACAAAAAGGGTGGCGCTTTCCTCA
ATAAAAACAAAAAAAAAAAAG

Query= MSMg01no272_h12.b1 MSMg01no272_h12.b1 CHROMAT_FILE:
MSMg01no272_h12.b1 PHD_FILE: MSMg01no272_h12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:38 2005
         (689 letters)



>mm_chr4_108700437_108701525
          Length = 1089

 Score = 1299 bits (672), Expect = 0.0
 Identities = 681/684 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctcagtctcccatgtgtatcaatgttattcttctttggttcatgcttgagtgt 64
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 990 gaattctctcagtctggcatgtgtatcaatgttattcttctttggttcatgcttgagtgt 931

                                                                       
Query: 65  ctcagcatttcctataaaaaatttaaaacattaaaaattatagaagtaactgttaaaggt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 930 ctcagcatttcctataaaaaatttaaaacattaaaaattatagaagtaactgttaaaggt 871

                                                                       
Query: 125 cttctacaccaacaatgagttttctacaagcttagaaaacctatgaaattacccaagtga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 cttctacaccaacaatgagttttctacaagcttagaaaacctatgaaattacccaagtga 811

                                                                       
Query: 185 catgtagtaatagcataagccaggagacaattctgaaatagacacatagggattgatggt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 catgtagtaatagcataagccaggagacaattctgaaatagacacatagggattgatggt 751

                                                                       
Query: 245 tggaaaaaacctcaacaactgacagtaattgcctaaagttcctttcttgatagtctagta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 tggaaaaaacctcaacaactgacagtaattgcctaaagttcctttcttgatagtctagta 691

                                                                       
Query: 305 ttaaattggttttcccctctgaattattttactaaaattctgcctaattcttaaaaataa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 ttaaattggttttcccctctgaattattttactaaaattctgcctaattcttaaaaataa 631

                                                                       
Query: 365 aacataaaaagctagtatgccataagttacacaacagatacagaaaaatattataaaaca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 aacataaaaagctagtatgccataagttacacaacagatacagaaaaatattataaaaca 571

                                                                       
Query: 425 gccttgaattagatcaatccatcctggcctctatactatgacaagattaatagattacaa 484
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 570 gccttgaattagatcaatccatcctggcctctatactatgacaagattaacagattacaa 511

                                                                       
Query: 485 ctgacatctaccaacaataaaaagccattatgaaaagcagataccagttcaacggcttac 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 ctgacatctaccaacaataaaaagccattatgaaaagcagataccagttcaacggcttac 451

                                                                       
Query: 545 ctgttaaacaaaattaggccacagctcaaaaagtattagaaaaccattcctgagtgtctc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 ctgttaaacaaaattaggccacagctcaaaaagtattagaaaaccattcctgagtgtctc 391

                                                                       
Query: 605 ttgataaatggaaacatcaggttggggtgcagactttacaatcagataaagagatactca 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ttgataaatggaaacatcaggttggggtgcagactttacaatcagataaagagatactca 331

                                   
Query: 665 aacccccatcaaatatttatgacc 688
           ||||||||||||||||||||||||
Sbjct: 330 aacccccatcaaatatttatgacc 307


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1089
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1079
Effective search space:   732641
Effective search space used:   732641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)