BAC Information

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BAC

Clone NameMSMg01-272J07
Chromosome4 (Build37)
Map Location 67,607,603 - 67,607,758
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039379, Hmgb1-rs18, LOC433715
Downstream geneTcp1-ps1, Dbc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272J07.T7 (MSMg01no272_j07.b1)MSMg01-272J07.TJ (MSMg01no272_j07.g1)
ACCAG411825AG411826
length751756
length of high quality
(start - end)
334 (40 - 373)162 (446 - 607)
definitionCHROMAT_FILE: MSMg01no272_j07.b1 PHD_FILE: MSMg01no272_j07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:46 2005CHROMAT_FILE: MSMg01no272_j07.g1 PHD_FILE: MSMg01no272_j07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TTGTTCAGCGCTGAGCCCCATTTGTTAATGGGGTTATTTGATTTTCTGGA
GCCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTATCTG
ATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTC
TTGTTGAAGGTGTCTTTTGCCTTGCAGAAGCTTTGCAAATTTATGAGGTC
CCATTTATTGATTCTCAATCTTACTGCACAAGCCATTGCTGTTCTATTCA
GGAACTTTTCCCCTATAACCATATCTTTGAGGCTTTTCCCTACTTTCTCC
TCTATAAGTTTCTTTGTCTCTAGCTCTATGTGGAGTTCCTTAATCCACTT
AGATTTGACTTTAATACAAGGAGATAGGAATGGATCAATTCACATTCTTC
TACATGATAACCACCAGTTGTGCCAGAACCATTTGTTGAAAATGCTGTCT
TTTTTCCACTTGATGGTTTTAGATCCCTTGTCAAAGATCAAATGACCATA
GGTGTGTGGGGTCATCTCTGGGTCTTCAATTCTGTTCCATTGGTCTACTT
GTCTGTCACTATACCAGTACCATGCAGTTTTTATCACAATTGCTCTGTAG
TACAGCTTTAGGTCAGGCATGGTGATTCCACCAGAGGTTCTTTTATCCTT
GAGAAGAGTTTTTGCTATCCTAGGTTTTTTGTTATTCCGGATGAATTTGC
N
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTCTGACTTAATAATTTAATGGTTACAAACCT
CTTTTAAATATTTGGGAAGCCTTATATTCATTTGGACTCAAGATTTTTTT
TTTTTTTTTTTTTTTTTTGGTTTTTGAGACAGGGTTTCTCTGTATAGCCC
TGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAAGA
GATCCACCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCAC
CACGCCCGGCTTTGGACTCAAGATTTTATAAGATAAAATTATAATATGGT
TTCTTTGGAATATTTTTTACACCCCCCCCCCTCAAACATAATGCATCTGT
GTTTTTTATGGATGTTATCTAGAAATAATAACTATAATCACATTGTTTTG
AAATGGATCTCTAATACGTTTATCATCTTGGAAGTATATACTCTATAAAC
ATTAAACATAATCCTGTCTACTCCTATTTTGTAGTACCTGGAAAACACCT
TTTAACTTTCCTTTTTTTGGTTGGTTTGGTTTGGTTTGTTTTGGTTTTTT
TCGAGACAGGGTTTCTCTATATAGCCTTGGCTGTCCTGGAACTCACTCTA
TATACCAGGCTAGCCTTGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAA
GTGCTGGGATTAAAGGTGTGTGCCACCACCACTCATCAATTTTCCATTTC
TATGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_j07.g1 MSMg01no272_j07.g1 CHROMAT_FILE:
MSMg01no272_j07.g1 PHD_FILE: MSMg01no272_j07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:46 2005
         (162 letters)



>mm_chr4_67607439_67608000
          Length = 562

 Score =  259 bits (134), Expect = 5e-74
 Identities = 153/162 (94%), Gaps = 6/162 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttgaaatggatctctaatacgtttatcatcttggaagtatatactctataaacattaa 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 320 ttttgaaatggatctctaatacgtttatcatcttgtaagtatatactctataaacattaa 261

                                                                       
Query: 61  acataatcctgtctactcctattttgtagtacctggaaaacaccttttaactttcctttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 acataatcctgtctactcctattttgtagtacctggaaaacaccttttaactttcctttt 201

                                                     
Query: 121 tttggttggtttggtttggtttgttttggtttttttcgagac 162
           ||||     |||| |||| ||||||||| |||||||||||||
Sbjct: 200 tttg-----tttgttttgttttgttttg-tttttttcgagac 165


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 162
Length of database: 562
Length adjustment: 8
Effective length of query: 154
Effective length of database: 554
Effective search space:    85316
Effective search space used:    85316
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)