Query= MSMg01no272_j11.b1 MSMg01no272_j11.b1 CHROMAT_FILE:
MSMg01no272_j11.b1 PHD_FILE: MSMg01no272_j11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:47 2005
(290 letters)
>mm_chr4_142139036_142139726
Length = 691
Score = 491 bits (254), Expect = e-143
Identities = 281/290 (96%), Gaps = 1/290 (0%)
Strand = Plus / Plus
Query: 1 caactttacatgggttctgaggcttcaaacttagatcctcagggtgttgcccccggctat 60
|||||||||| ||||||||||||| ||||||||||||||||||||| ||| || ||||||
Sbjct: 201 caactttacacgggttctgaggctccaaacttagatcctcagggtggtgcacctggctat 260
Query: 61 atccactgtgccatctgtctagcccttttggtcagattt-aacttcctgcgcaagcaaca 119
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 atccactgtgccatctgtctagcccttttggtcagattttaacttcctgcgcaagcaaca 320
Query: 120 ccaccaatgatatgagctttcctgagccagccttctcttctgcacttcaataatgatgtg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaccaatgatatgagctttcctgagccagccttctcttctgcacttcaataatgatgtg 380
Query: 180 gagaaaatggagcttgttcagaggagaaatgagaggctggggaggaataatgagaaatgc 239
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagaaaatgaagcttgttcagaggagaaatgagaggctggggaggaataatgagaaatgc 440
Query: 240 acctgggtggcagtttaagaactccagggtgcttggctttgagacaagaa 289
||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 acctgggtggcagggtaagaactccagggtgcttggctttgagacaagaa 490
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 691
Length adjustment: 9
Effective length of query: 281
Effective length of database: 682
Effective search space: 191642
Effective search space used: 191642
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no272_j11.g1 MSMg01no272_j11.g1 CHROMAT_FILE:
MSMg01no272_j11.g1 PHD_FILE: MSMg01no272_j11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:47 2005
(294 letters)
>mm_chr4_142324408_142325101
Length = 694
Score = 553 bits (286), Expect = e-162
Identities = 292/294 (99%)
Strand = Plus / Minus
Query: 1 actgtgtgaagatgagagtcagaagggccttggcatctggtaggcaaacgcttcttactt 60
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 494 actgtgtgaagatgagagtcagaaggtacttggcatctggtaggcaaacgcttcttactt 435
Query: 61 cactactgtgaggcccaacgtgtactagaaaacccacaggtattcacataagaccttgat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 cactactgtgaggcccaacgtgtactagaaaacccacaggtattcacataagaccttgat 375
Query: 121 gaaatgtacttctagttaataagtatctacagaccctttgctatacatggagtggtgtcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 gaaatgtacttctagttaataagtatctacagaccctttgctatacatggagtggtgtcc 315
Query: 181 tgggcattggcactgcacatgaaggatgcaggtgatgtgcctccagagagagaaataagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tgggcattggcactgcacatgaaggatgcaggtgatgtgcctccagagagagaaataagc 255
Query: 241 tttaccccagcagtaatgaaatatgggacgagggacacaaaacaatggcaactg 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tttaccccagcagtaatgaaatatgggacgagggacacaaaacaatggcaactg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space: 195225
Effective search space used: 195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
