Query= MSMg01no272_n06.b1 MSMg01no272_n06.b1 CHROMAT_FILE:
MSMg01no272_n06.b1 PHD_FILE: MSMg01no272_n06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:04 2005
(662 letters)
>mm_chr4_78295420_78296486
Length = 1067
Score = 1199 bits (620), Expect = 0.0
Identities = 650/662 (98%), Gaps = 5/662 (0%)
Strand = Plus / Minus
Query: 6 ggaattcacagttcttatcataaacatatatgcattaggggttcccacacttcatacagt 65
|||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 867 ggaattcacagttcttataatagtcatatatgcattaggggttcccacacttcatacagt 808
Query: 66 tatcaatgactgcatctgcaaaagcaatcaataaaatgacaacccaataggtgaaagtct 125
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 tatcaatgactgcatctggaaaagcaatcaataaaatgacaacccaataggtgaaagtct 748
Query: 126 aacgcaaagacataaagaaatacatgatccctttgctgaaaataaaccttttgagattcc 185
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 747 aacgcaaagacataaagaaatacgtgatccctttgctgaaaataaaccttttgagattcc 688
Query: 186 caggaacagttgagggaaggagaagagggattacccaaggtcatatgcatttacgtctta 245
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 687 caggaacagttgagggaaggagaagagggattacccaaggtcatatgcatttaggtctta 628
Query: 246 agaatgggtcattgctattttaatataagtatatctaaaaagaatgctaactcttttatt 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 agaatgggtcattgctattttaatataagtatatctaaaaagaatgctaactcttttatt 568
Query: 306 taacatcagcaatgtttacagcttacaggaaatgttaatttcccttgcctctcagtagct 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 taacatcagcaatgtttacagcttacaggaaatgttaatttcccttgcctctcagtagct 508
Query: 366 gacaggctatgatctgacagt---aagatgggttccttgtccctgtctttctaccctgcc 422
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 507 gacaggctatgatctgacagtaagaagatgggttccttgtccctgtctttctaccctgcc 448
Query: 423 tcaactaacaacggataaactaatatggtgacaagacagtaagagctgtttatttacttt 482
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tcaactaacaacggataaaccaatatggtgacaagacagtaagagctgtttatttacttt 388
Query: 483 ccatggtgattattgcacactgcatggttttatgtacttgctgactccttttaatgcctt 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ccatggtgattattgcacactgcatggttttatgtacttgctgactccttttaatgcctt 328
Query: 543 tctggacagtgtccattcagaccactagatcatttt--gtcagattatttagggcaattt 600
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 327 tctggacagtgtccattcagaccactagatcattttaagtcagattatttagggcaattt 268
Query: 601 atgctcacatttttaaaaatctcatgtataatctgaaaaacattattttctagtaaataa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 atgctcacatttttaaaaatctcatgtataatctgaaaaacattattttctagtaaataa 208
Query: 661 ca 662
||
Sbjct: 207 ca 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1067
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1057
Effective search space: 689164
Effective search space used: 689164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no272_n06.g1 MSMg01no272_n06.g1 CHROMAT_FILE:
MSMg01no272_n06.g1 PHD_FILE: MSMg01no272_n06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:04 2005
(293 letters)
>mm_chr4_78216117_78216809
Length = 693
Score = 565 bits (292), Expect = e-165
Identities = 292/292 (100%)
Strand = Plus / Plus
Query: 1 atttgtattcagattatatatactatatttttaaatgccttgtatttccccatacttcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttgtattcagattatatatactatatttttaaatgccttgtatttccccatacttcat 260
Query: 61 attttttgatacaactctatacccaaggaaattagtatgaaattcattacagtcatggta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attttttgatacaactctatacccaaggaaattagtatgaaattcattacagtcatggta 320
Query: 121 ctttaattgaggaaaactgcttctgttttgagactattataaaaactataagaacagaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctttaattgaggaaaactgcttctgttttgagactattataaaaactataagaacagaaa 380
Query: 181 tgggtaaaaatgacattttaaattacagttctataaccaattttgaagataaaacaggca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgggtaaaaatgacattttaaattacagttctataaccaattttgaagataaaacaggca 440
Query: 241 gcattacagctgactggggtataataggaaaaatattactgtagatatatta 292
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcattacagctgactggggtataataggaaaaatattactgtagatatatta 492
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space: 194256
Effective search space used: 194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
