BAC Information

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BAC

Clone NameMSMg01-273B02
Chromosome4 (Build37)
Map Location 17,877,482 - 17,877,800
singlet/doubletsinglet
Overlap geneMmp16
Upstream geneLOC100040154, LOC667212, LOC100040173
Downstream geneLOC667251, LOC435772
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273B02.T7 (MSMg01no273_b02.b1)MSMg01-273B02.TJ (MSMg01no273_b02.g1)
ACCAG412175AG412176
length730730
length of high quality
(start - end)
325 (42 - 366)291 (70 - 360)
definitionCHROMAT_FILE: MSMg01no273_b02.b1 PHD_FILE: MSMg01no273_b02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:22 2005CHROMAT_FILE: MSMg01no273_b02.g1 PHD_FILE: MSMg01no273_b02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTCTGTAAGTAATAGTAAAGTTATATGGATCCAAGAGGTAATATTTGGA
AATATATATACATACAAATACCGATGTTTACATAATAATTACATAAAAAG
AGACAATGTGTTTGAACAAGAGTTCATAGGGGTGTGACAGGGTTCCAAGA
GAGATAGGTGAAAAAAAACATTGTAATTAAATTATAACCTCAAAATTAAA
AATAAACAAAAAAATAAATTGGAGATAATCTTTAAATTCAATTTTCAATA
ATTCTTGTTTCCAAAGGTTTACTCTAAGTTACTATGCTGCCAGAAAAAAA
TTGTTTCTGCATAATTTTATTTTGACCCCCCCGCAACTTTGATGTCTGAC
AACAGTGAAATTATTGACTACATCTCACATATCTATGAAACTGATTCATC
TGGGAAGGATTGAAATTACCTAGGTAGCATTTAACATGGCAACATCATAA
TGAAAAAGTTCTCATTTCTTACTGTAATTATATTTAAGTGAAAAGAAAAA
AATCTCTGTGATGGAGAACATCTGTGGAATGTGAATGAACTGAGAGGTGG
GAGGTATAATATGAGGTAGATGACATTTTGAGAGGGATGGTAGTATTGAT
GACTCCAGATCTACTCTTGTAGAGAAGTTTTAAATACCACATTCCCTGTT
GTTAATTCTAAACCTTCGTGATCTATGACC
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTTTCAGTGCGGATCTTTCTTTTTTTCCTG
TTCTATTACTAATAGACAGACACTGTAAACCACTTGGATTACTGTCAACT
GAAGAATAGATACAGATGTGGTACCTTTATACAATGGAGTATTACTCGCT
TTTACAAAAAATGACATAATAAAATTTCCAGGCAATTAATGTAACTAGAA
AAAAATCATCCTGAGTAAGGTGATCCAGTTCCAGAAGGATTGGTATGGTT
TTTATTGCTTATATCTGAATATTAGCTATTAAGTAAATGATAGCCAAGTT
ACAATCTGTGGATCTAGAGGTACGCATACAGGAAGGGACTAGGAGAGATA
CATGGATATTTCTGGGATGGGGAGATATAATTGATTTCATGGGTAGACCA
GGCACAGGGAAGAGATATGGAAATGTGAAAAGCAGGAGGAGAATGGAAGG
CGAAATTGAGTTGATGAAGGGAATGAGAAAAGAGAAAGTTATAATTAAGG
AACATTGGAAGAGTGATATGGAAACCTAATAGAGTGGAAACCTGCTAAAG
TATATTAATGAAGCTTACAAATAATGGGGGACACAGAGTCCCATCTGTAA
TCTCTTGTCACTAAACAAAGCACTCAGTACTGGGACTAGGTTATGCACAA
TTGAGTTGTTAGACATAAAAATCCCCTGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_b02.b1 MSMg01no273_b02.b1 CHROMAT_FILE:
MSMg01no273_b02.b1 PHD_FILE: MSMg01no273_b02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:22 2005
         (325 letters)



>mm_chr4_17877401_17878125
          Length = 725

 Score =  609 bits (315), Expect = e-179
 Identities = 318/319 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttctgtaagtaatagtaaagttatatggatccaagaggtaatatttggaaatat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 gaattcttctgtaagtaatagtaaagttatatggatccaagaggtaatatttggaaatat 341

                                                                       
Query: 65  atatacatacaaataccgatgtttacataataattacataaaaagagacaatgtgtttga 124
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 atatacatacaaatacagatgtttacataataattacataaaaagagacaatgtgtttga 281

                                                                       
Query: 125 acaagagttcataggggtgtgacagggttccaagagagataggtgaaaaaaaacattgta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 acaagagttcataggggtgtgacagggttccaagagagataggtgaaaaaaaacattgta 221

                                                                       
Query: 185 attaaattataacctcaaaattaaaaataaacaaaaaaataaattggagataatctttaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 attaaattataacctcaaaattaaaaataaacaaaaaaataaattggagataatctttaa 161

                                                                       
Query: 245 attcaattttcaataattcttgtttccaaaggtttactctaagttactatgctgccagaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 attcaattttcaataattcttgtttccaaaggtttactctaagttactatgctgccagaa 101

                              
Query: 305 aaaaattgtttctgcataa 323
           |||||||||||||||||||
Sbjct: 100 aaaaattgtttctgcataa 82


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)