BAC Information

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BAC

Clone NameMSMg01-273F18
Chromosome4 (Build37)
Map Location 147,272,442 - 147,432,339
singlet/doubletdoublet
Overlap geneMfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr
Upstream geneLOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1
Downstream geneLOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1, Angptl7, Exosc10, LOC100043151, Srm, Masp2, Tardbp, Gm572, LOC100041733, LOC100041742, LOC100041755, Casz1, Pex14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273F18.T7 (MSMg01no273_f18.b1)MSMg01-273F18.TJ (MSMg01no273_f18.g1)
ACCAG412382AG412383
length718714
length of high quality
(start - end)		315 (46 - 360)288 (76 - 363)
definitionCHROMAT_FILE: MSMg01no273_f18.b1 PHD_FILE: MSMg01no273_f18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:43 2005CHROMAT_FILE: MSMg01no273_f18.g1 PHD_FILE: MSMg01no273_f18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,432,029 - 147,432,339)(147,272,442 - 147,272,728)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCCTTCTTTTCCCATTAGCGCCTTGGACCAGCCCACAGCCTGGAGA
CTTGAGGGGTAGGTGGGTGGGGCTTCTGTTCTTTTAAATCAAGGCATCAT
CCTCTCCTGACCCACGTCTCCTTTTCAGGTGTCACAGAGAGACCCCTCTG
CCCAGCCCTCGAGTTCTGGCTGCCACTGCCTGCACGGGCCCTCCACTGGC
CCCCTACAGGAATAGGTGAGCCCTGCAGCTCTGAGACTAGGGCCCTGAAG
GGCCAAGGCCAGGCTCCTCAAAGGTGGACCAGCTGTGCATGGGAGGGGTG
GTCAGTCCCTTCATGATTGCCTTTTCAANCCTGGCAGAATGGCCGAGCCT
GGGCCTCTTGTTCTTTGCTGATAAAGAAAATAGATGTTCTTGGCCTGCAG
GGACAGGTACCTATAGTGTTGGCATAGTCAGGTTTCCCAGCAGGCCTGGA
GCCTGGCAAGGGCATGGCAGCGCTGGGTAGATGTTCACTGGGTGGAGCAG
CTGTCTTGGGCTCTGGTAGGGAGGCTCAGCTCCTCTGTACCAAGCAAATG
CCCTGGGAACAACTCCCCACTCATCCTAAGTATCCCCTTGCATAACTGGA
GGGCCTAACTACTAATTGCACCTCTTGCCCCAAACCCTAAGAGATGGGCA
TGAAGTGTCGATAATTTA

CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTACTTAATATTAATAGTTTGAGC
CTAAGGTTCCTGGTACTCAGAATCCACAGGGATCCAGGCAGAGCACAGTT
GAGGGCAATGACACAGTTAGGCATGAGTGGCCTGCCTAAGCAGGGGCCCA
GCTCACCTTCAAGGAAGCTGGCGCTCTCTTGGATGTAGGCCCCCAGCTGC
TCAAAGATTCCATTGATCTTTTTCTTGGCAGTGACAAAGTGCTTGAGAGG
GGAAGCATTCACTTCAGCCATGTGTCGCTTATCCTTCTTGACGGTGACGA
TGGAGTTGCATCTAGTAATTAGCACGGACATNCCGCTGCAAGGGAACCAA
GACTATGTGAGCACAGGCACACTAAGAGAAAAAACATGCTGCTGGGCGCA
GATGGGGGACGAGAACTGGGACCACCAAGAATATGGGGAGCTCCCAACTC
ACTCAAGAGAGACAAGGTCCCAACATCATAAATAGGAAGGGAGTTCTCAG
CACACCTGGGCCCATCTCCATGTCACACTGTGTGGATTCACAAATGTCTG
GTTGCAGAGCCCTGAGATCTATGCTAGCTATCCCTGCCTTGCCTATTCAA
CACTGTCCAGTACTTCAGAGAGAAGGGAGAAATCTTGGATCTCAAAATCA
CACACACACAGCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_f18.b1 MSMg01no273_f18.b1 CHROMAT_FILE:
MSMg01no273_f18.b1 PHD_FILE: MSMg01no273_f18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:43 2005
         (315 letters)



>mm_chr4_147431825_147432539
          Length = 715

 Score =  586 bits (303), Expect = e-172
 Identities = 309/311 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcccttcttttcccattagcgccttggaccagcccacagcctggagacttgagggg 64
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 515 gaattcccttcttttcccattagcgccttgggccagcccacagcctggagacttgagggg 456

                                                                       
Query: 65  taggtgggtggggcttctgttcttttaaatcaaggcatcatcctctcctgacccacgtct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 455 taggtgggtggggcttctgttcttttaaatcaaggcatcatcctctcctgacccaagtct 396

                                                                       
Query: 125 ccttttcaggtgtcacagagagacccctctgcccagccctcgagttctggctgccactgc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ccttttcaggtgtcacagagagacccctctgcccagccctcgagttctggctgccactgc 336

                                                                       
Query: 185 ctgcacgggccctccactggccccctacaggaataggtgagccctgcagctctgagacta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 ctgcacgggccctccactggccccctacaggaataggtgagccctgcagctctgagacta 276

                                                                       
Query: 245 gggccctgaagggccaaggccaggctcctcaaaggtggaccagctgtgcatgggaggggt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 gggccctgaagggccaaggccaggctcctcaaaggtggaccagctgtgcatgggaggggt 216

                      
Query: 305 ggtcagtccct 315
           |||||||||||
Sbjct: 215 ggtcagtccct 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no273_f18.g1 MSMg01no273_f18.g1 CHROMAT_FILE:
MSMg01no273_f18.g1 PHD_FILE: MSMg01no273_f18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:43 2005
         (288 letters)



>mm_chr4_147272242_147272929
          Length = 688

 Score =  555 bits (287), Expect = e-162
 Identities = 287/287 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttacttaatattaatagtttgagcctaaggttcctggtactcagaatccacagggatcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttacttaatattaatagtttgagcctaaggttcctggtactcagaatccacagggatcc 260

                                                                       
Query: 61  aggcagagcacagttgagggcaatgacacagttaggcatgagtggcctgcctaagcaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggcagagcacagttgagggcaatgacacagttaggcatgagtggcctgcctaagcaggg 320

                                                                       
Query: 121 gcccagctcaccttcaaggaagctggcgctctcttggatgtaggcccccagctgctcaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcccagctcaccttcaaggaagctggcgctctcttggatgtaggcccccagctgctcaaa 380

                                                                       
Query: 181 gattccattgatctttttcttggcagtgacaaagtgcttgagaggggaagcattcacttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gattccattgatctttttcttggcagtgacaaagtgcttgagaggggaagcattcacttc 440

                                                          
Query: 241 agccatgtgtcgcttatccttcttgacggtgacgatggagttgcatc 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agccatgtgtcgcttatccttcttgacggtgacgatggagttgcatc 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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