XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAGTAT
TGAGGAAATTACCAACTAGTGAGACACAACTAGCAAGTATATAGTCTCAC
ATCCTAAGAAGCTCTAGAGAAACACTATCAGTTGCTAATTGTTGAGAGGA
GCACTCAGGAGAAAACAATGCTGGCAGGGATGACTTACTCCCTTCACTAG
TTACCAGCTATGTGGCCTGAGTAAGTTACTTACTCACCTGGACTTCACAT
CCTTAGGAGTGACTTACTTTTGAGATCTCTGCTGATTGGATGGGTTAGAG
CAGAACCTGGGTTGTACTAAAGTTTCTATAATTACTGTTATAATTACCAA
ATGACTGTTTTTGACCGCCCACATGTACCTTTTCCACTGAAATGCATGAT
GAACAAGGGGTGGACACTCAAAAAGATTTCCATTGCCTTCCTGGTAGGTT
TAGAGCTTGGTCACTCCCTGCAAGCTGAAGAGTCACTTCTGTATCCCAGA
GTTTCTCAATCAGTACCCAGCGTCTCAGCAAGATCACCTTGTAGTTATAC
TCTACAAAGGTTTTAAAAGTTGCAGTGTAGTATCTCTACTCCTTCCTGTT
CCATCAACAGCCACATCTTTTCATGTTTTGCCAGCCTTGTCTTTTAGACA
TCATGGGAAAGATCAGAGTGAACAGATCGGGCCATATCGGGTGCCTGGTT
ACCAGGGCTGTCTTCTGCTCTGCATCTNCACAACTGGAGATTGTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCTCTGCCCTGAGGGACTATTGAGTAGTGATGGCTTC
TGGGGAAGGGGTAGCCATTGTTCCTAGTAGTATACCTAACAATGGACCCA
CTATGCTTCAGTAGGTCTTTCCAATCCTGAAGTAGTCACACAGAATTCTG
GCTAAAGTCAGACAAAAGACATGAATGTGAAAACAAAACTTGTAGGGAGG
AGGGGAAAGATAACAGGGCAGAAGGCAGTTGCAAGACTTTTGGGGATGAG
AGTTAACAGAATGTATTATACACCTGTATTAAGTTGCTAAAGAACAAATT
TAATCATTTTGTATAGCCCCCCCCACCCTGTATACTTACTAAATTAAACA
AACAAGCAAACAAAAGCTAAATTAAAACAAAGCACCAAGGTAAAACAGGA
AGGGAACTCACCAAGATCAGTTTGTTCTCACCGTTTTAGAAGGACAATGC
TGAGAATGCTAACAAGTTAGTATCTCCCTCTTACTGTTCAGCACCAGAGA
TGTGTGTATTCCTGAGTATATGTCTGTGTAGTCCGTATGTGGAGAAGCCA
GGGAGATCAGAAGAGGGTGTCAAATCTCTTGAAACTGGAGTTATAGGCAG
TCGGGAGCCACCATGTGCATGCTGGGAATCAAACCTAGGTCCTCTGCAAG
AGCAGCAAGTGCTCGCAATGGCTGGATCATCTGTCCAGCCTTGACATCAG
N

Query= MSMg01no273_i19.b1 MSMg01no273_i19.b1 CHROMAT_FILE:
MSMg01no273_i19.b1 PHD_FILE: MSMg01no273_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:56 2005
         (323 letters)



>mm_chr4_103612738_103613460
          Length = 723

 Score =  578 bits (299), Expect = e-169
 Identities = 314/319 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctagtattgaggaaattaccaactagtgagacacaactagcaagtatatagtctc 64
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 205 gaattctagtattgaggaaattaccaactagtgagacacgactagcaagtatatagtctc 264

                                                                       
Query: 65  acatcctaagaagctctagagaaacactatcagttgctaattgttgagaggagcactcag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acatcctaagaagctctagagaaacactatcagttgctaattgttgagaggagcactcag 324

                                                                       
Query: 125 gagaaaacaatgctggcagggatgacttactcccttcactagttaccagctatgtggcct 184
           | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 325 gtgaaaacaatgctggcagggatgacttactgccttcactagttaccagctatgtggcct 384

                                                                       
Query: 185 gagtaagttacttactcacctggacttcacatccttaggagtgacttacttttgagatct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gagtaagttacttactcacctggacttcacatccttaggagtgacttacttttgagatct 444

                                                                       
Query: 245 ctgctgattggatgggttagagcagaacctgggttgtactaaagtttctataattactgt 304
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 445 ctgctgattggatgggttagagcagaacctgggttgtagtaaagtttctataattactgt 504

                              
Query: 305 tataattaccaaatgactg 323
           || ||||||||||||||||
Sbjct: 505 tacaattaccaaatgactg 523


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no273_i19.g1 MSMg01no273_i19.g1 CHROMAT_FILE:
MSMg01no273_i19.g1 PHD_FILE: MSMg01no273_i19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:56 2005
         (294 letters)



>mm_chr4_103757835_103758528
          Length = 694

 Score =  549 bits (284), Expect = e-161
 Identities = 290/292 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctctgccctgagggactattgagtagtgatggcttctggggaaggggtagccattgttcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 492 ctctgccctgagggactattgagtagtgatggcttctggggaaggggcagccgttgttcc 433

                                                                       
Query: 61  tagtagtatacctaacaatggacccactatgcttcagtaggtctttccaatcctgaagta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tagtagtatacctaacaatggacccactatgcttcagtaggtctttccaatcctgaagta 373

                                                                       
Query: 121 gtcacacagaattctggctaaagtcagacaaaagacatgaatgtgaaaacaaaacttgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 gtcacacagaattctggctaaagtcagacaaaagacatgaatgtgaaaacaaaacttgta 313

                                                                       
Query: 181 gggaggaggggaaagataacagggcagaaggcagttgcaagacttttggggatgagagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gggaggaggggaaagataacagggcagaaggcagttgcaagacttttggggatgagagtt 253

                                                               
Query: 241 aacagaatgtattatacacctgtattaagttgctaaagaacaaatttaatca 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 aacagaatgtattatacacctgtattaagttgctaaagaacaaatttaatca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)