Query= MSMg01no273_j21.b1 MSMg01no273_j21.b1 CHROMAT_FILE:
MSMg01no273_j21.b1 PHD_FILE: MSMg01no273_j21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:01 2005
(321 letters)
>mm_chr4_86614776_86615496
Length = 721
Score = 509 bits (263), Expect = e-148
Identities = 300/317 (94%), Gaps = 8/317 (2%)
Strand = Plus / Minus
Query: 5 gaattcaaatctggatttcttcttggtgaaatgacaccaagggtaagtgcttcaatatca 64
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 gaattcaaacctggatttgttcttggtgaaatgacaccaagggtaagtgcttcaatatca 414
Query: 65 ttttttgttcgtttttccttttgttttttcttttgtttctaacattcctccttataattt 124
||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 ttttttgtttgtttttgtttttgttttttcttttgtttctaacattcctccttataattt 354
Query: 125 gttttgtcagggaagttgtcacagatgaaaattctgactcagcagttaacagtatcaatt 184
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct: 353 gttttgtcagggaagttgtcacagatgaaaaatctgacacagcagttaacagtatcaatt 294
Query: 185 ttatgtaataaaaataaataaataaataaataaataaactttagatgtaaacatgtaata 244
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 ttatgtaataa--------aaataaataaataaataaactttagatgtaaacatgtaata 242
Query: 245 ttccaaaaacaaccacttaaaatatgaactgaaatctatcttaatatacttcattaagtc 304
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 241 ttcctaaaacaaccacttaaaatatgaactgaaatatatcttaatatacttcattaagtc 182
Query: 305 ttggtgttacatgcatg 321
|||||||||||||||||
Sbjct: 181 ttggtgttacatgcatg 165
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space: 222144
Effective search space used: 222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no273_j21.g1 MSMg01no273_j21.g1 CHROMAT_FILE:
MSMg01no273_j21.g1 PHD_FILE: MSMg01no273_j21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:01 2005
(248 letters)
>mm_chr4_86457683_86458330
Length = 648
Score = 460 bits (238), Expect = e-134
Identities = 245/248 (98%)
Strand = Plus / Plus
Query: 1 tttttcacattatggagaacactatttcatgttatggaaaacaatgattttccttatata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttttcacattatggagaacactatttcatgttatggaaaacaatgattttccttatata 260
Query: 61 gatttattttcttaaaacagatgagacatgtgcatgaaataatacaattgattatttgtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatttattttcttaaaacagatgagacatgtgcatgaaataatacaattgattatttgtt 320
Query: 121 aggttgaatagagtttattgttgtattttatttgttttcttanacaaaagttttctgtaa 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 aggttgaatagagtttattgttgtattttatttgttttcttagacaaaagttttctgtaa 380
Query: 181 ctattctagtctggaagtcactgtgtatanatggccttgaattcctgatcctcccgcctc 240
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 ctattctagtctggaagtcactgtgtatagatggccttgaattcctgatcctcccgcctt 440
Query: 241 tgccccct 248
||||||||
Sbjct: 441 tgccccct 448
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space: 152721
Effective search space used: 152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
