Query= MSMg01no273_k02.b1 MSMg01no273_k02.b1 CHROMAT_FILE:
MSMg01no273_k02.b1 PHD_FILE: MSMg01no273_k02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:02 2005
(321 letters)
>mm_chr4_115962806_115963526
Length = 721
Score = 569 bits (294), Expect = e-166
Identities = 311/320 (97%), Gaps = 8/320 (2%)
Strand = Plus / Plus
Query: 4 ggaattcacagagatccacctgcctctgcctccctggtgctgggattaaaggtgtgagct 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcacagagatccacctgcctctgcctccctggtgctgggattaaaggtgtgagct 263
Query: 64 actacacctggcctcattttattttgatttagagagaataaagttctgtccacaaacaat 123
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 264 actacacctggcctcattttatttttatttagagagaataaagttctgtccacaaacaat 323
Query: 124 ggtatactcttctcttttttgggaggcagctatattcatcactgtccaccatgtacctct 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggtatactcttctcttttttgggaggcagctatattcatcactgtccaccatgtacctct 383
Query: 184 tacataaaaagtatttaatctcatttattatgaatctttcccatcatgtggatacccaaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tacataaaaagtatttaatctcatttattatgaatctttcccatcatgtggatacccaaa 443
Query: 244 tgtgaacatgtgcttctgtgttgggtgtacacgcacacacacacatgcacaca--cacac 301
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct: 444 tgtgaacatgtgcttctgtgttgggtgtacacgcacacacacaca--cacacatgcacac 501
Query: 302 a----cagacacacacgcgc 317
| |||||||||||||||
Sbjct: 502 atacacagacacacacgcgc 521
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space: 222144
Effective search space used: 222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no273_k02.g1 MSMg01no273_k02.g1 CHROMAT_FILE:
MSMg01no273_k02.g1 PHD_FILE: MSMg01no273_k02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:02 2005
(293 letters)
>mm_chr4_116100678_116101370
Length = 693
Score = 547 bits (283), Expect = e-160
Identities = 289/291 (99%)
Strand = Plus / Minus
Query: 1 tttgctcattttaaaaactgagtactcttactttatttattttacattgaccttattctt 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 491 tttgctcattttaaaaactgagcactcttactttatttattttacattgaccttattctt 432
Query: 61 gttatagttggctctctgagttcattaagttctgaatcctaccaatttaatttaggaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 gttatagttggctctctgagttcattaagttctgaatcctaccaatttaatttaggaaaa 372
Query: 121 aaatattttagaaattccactataacatgatgagtttcttggcccaccagctcccatata 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 371 aaatattttagaaattccactataacatgatgagtttcttggcccaccagatcccatata 312
Query: 181 aggtcacagaaaccttttcttaattatgaaagcttggctttatcataggcttgtccccaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 aggtcacagaaaccttttcttaattatgaaagcttggctttatcataggcttgtccccaa 252
Query: 241 ctagctcttactacttaaattgacctatttatactcatctatgtccatgta 291
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ctagctcttactacttaaattgacctatttatactcatctatgtccatgta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space: 194256
Effective search space used: 194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
