BAC Information

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BAC

Clone NameMSMg01-273M02
Chromosome4 (Build37)
Map Location 79,916,748 - 79,917,032
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667922
Downstream geneTyrp1, D4Bwg0951e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273M02.T7 (MSMg01no273_m02.b1)MSMg01-273M02.TJ (MSMg01no273_m02.g1)
ACCAG412672AG412673
length716717
length of high quality
(start - end)
674 (43 - 716)285 (72 - 356)
definitionCHROMAT_FILE: MSMg01no273_m02.b1 PHD_FILE: MSMg01no273_m02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:11 2005CHROMAT_FILE: MSMg01no273_m02.g1 PHD_FILE: MSMg01no273_m02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTTTTTTTCTTTTTTTTTTATATTTTTATTAGGTATTTTCCTCATTT
ACATTTCCAATGCTATCCCAAAAGTCCCCTATACCCTCCCACCCACTCCC
CTACCCACCCACTCCCACTTTTTGGACCTGGGGTTACCCTGTCCTGGGGC
ATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACT
AGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGATCTCAGGGGTACT
GGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGTTCCCTTTAGCT
CCTTGGGTACTTTCTCTAGCCCGCCCATTGGGGTCCCTGTGATCCATCCA
ATAGCTGACTGTGAGCATCCACTTCTGTGTTTGTTAGGCCCCCGCATAGT
CTCACAAGAAAGAGCTCTATCTGGGTCCTTTCAGCAAAATCTTGCTAGTA
TGTGCAATGGTGTCAGCGTTTGGAAGCTGATTATGGGATGGATCCCCAGA
TATGGCAGTCTTTGGATGGTCCATCCTTTTGTTTCAGCTCCAAACATTGT
CTCTAACTCCTTCCATGGGTGTTTTGTTCCCAATTCTAAGAAGGGGCAAA
GTGTCCACACTTTGGTCTTCGTTCTTCTTGAGTTTCATGCATTCAGCAAA
TTGTATCTTATATCTN
GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATTGTCTCTGCCTCCCAGCTCACTGTGGA
ACAGGTGTTGTAACAGGCTCCTGCTACTGTGCGGCACTTTGCATGTGTTC
TTGGGATTAGAGTATGAGATCCCACACTTGTCTAGAGGTCACTTTACTCA
CTAAGTAGTTTCTGCAGACAATTTAACATCTTCAATTACAATAGATGAGC
CTGGCGTGGTGGCACCCGCCTTTAATCCCTGCACTTGGGAGGCAGAGGCA
GGTGGATTTCTGAGTTCGAGGCCAGACTGGTCTACAAAGTGAGTTCCAGG
ACAGCCATTTTTTATACCGCACAAACCCTGTCTTGAAAAACAAAACAAAC
AAATAAACCAAAAATTACAATAGATGATTGTTTCATTGTGTCTATTGATT
TGTAATTTTTTTCTACATTTTTAGCCTTTCCTTACATTTTCCTTTTAAGG
ACTAATAATATTACCCTCCTTTCTCAGCAAAATCCCAGTTATTAGTCTTA
TTGATTTTTTCTATTTCTTCCTTATATTCTACTATATAAATCTCTGCTTT
AAAATATTCTGTCCACTTTCTTGGGCTTTGCAATTTTCTCCTGTGAACTT
AAAATATAAGCATAAGATATTTATTTTGAATTCTTTCTTTTTGAATAAAA
ATATCTAAACTTATACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_m02.g1 MSMg01no273_m02.g1 CHROMAT_FILE:
MSMg01no273_m02.g1 PHD_FILE: MSMg01no273_m02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:11 2005
         (285 letters)



>mm_chr4_79916657_79917341
          Length = 685

 Score =  474 bits (245), Expect = e-138
 Identities = 275/285 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgtctctgcctcccagctcactgtggaacaggtgttgtaacaggctcctgctactgtg 60
           ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 376 attgtctctgcctcccaactcactgtggaataggtgttgtaacaggctcctgctactgtg 317

                                                                       
Query: 61  cggcactttgcatgtgttcttgggattagagtatgagatcccacacttgtctagaggtca 120
           | ||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 316 cagcactttccatgggttcttgggattggagtatgagatcccacacttgtctagaggtca 257

                                                                       
Query: 121 ctttactcactaagtagtttctgcagacaatttaacatcttcaattacaatagatgagcc 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ctttactcattaagtagtttctgcagacaatttaacatcttcaattacaatagatgagcc 197

                                                                       
Query: 181 tggcgtggtggcacccgcctttaatccctgcacttgggaggcagaggcaggtggatttct 240
           |||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 196 tggcgtggtggcacacacctttaatcccagcacttgggaggcagaggcaggtggatttct 137

                                                        
Query: 241 gagttcgaggccagactggtctacaaagtgagttccaggacagcc 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 gagttcgaggccagactggtctacaaagtgagttccaggacagcc 92


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)