BAC Information

Click to search

BAC

Clone NameMSMg01-273M08
Chromosome4 (Build37)
Map Location 72,037,788 - 72,038,098
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039979, LOC667638, EG667649, Tle1
Downstream geneAldoa-ps2, EG384113, LOC667713, LOC100039698
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273M08.T7 (MSMg01no273_m08.b1)MSMg01-273M08.TJ (MSMg01no273_m08.g1)
ACCAG412684AG412685
length731736
length of high quality
(start - end)
314 (40 - 353)287 (69 - 355)
definitionCHROMAT_FILE: MSMg01no273_m08.b1 PHD_FILE: MSMg01no273_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:12 2005CHROMAT_FILE: MSMg01no273_m08.g1 PHD_FILE: MSMg01no273_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
TAGATTCTTGTGCCTCTGCCTCCTGAATGCTAGGATTAAAGGCATGAGCC
AACACTGCTTCACAAGTCATTACTTAATTTCTTTTATTAATGATATTAAG
AATCCCAAGAGAAAAAAATCCCAATTCCTTGTCATCATCTGGTGAACATG
AAAGGACTCTCCAAAATTTCAGATAATACTCATTAGTACTAGGATATATC
ATTATTTTCAGACTTCTGGGTTTAGAGGGAATGTGGAGCTTGCTCAGGTG
GGATACAGCAGCACACTGGTGATCACCTCCCCTCTTCCTGACAAGGCACC
TGCATATGTTATTACCACCACCGCCACCTATGGATGCCTATTCTTGTCAG
CTTTCCCAAGCCCTCACATATGAACAACTCAGTTCTCAATAAACCCATTT
TCTTGGTGGAGAATCACTGTCTCACTTTGGCTATCACTGAGACATTCTGG
CAACAACAACAACAAAAAAGGTAATCCAACAACACTGTCTTATCAAGCAT
GCTACAGTATAGATTCTCCCAGATTTTATCCCACTGTTAGTGGAGCCAGC
AGTCCATAGGTGGAGCAATGCTCATCTGAAAGTCAGATGACCCTAAAGTC
ATGTCTTCTAACATTGTGCATGTTGCTTGACATTCTAGTTTTACCCCAGA
ATACCTATCTACATATATCGGACTCCAGTCA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTATGGCTGCTAAATGACTTCAGCAAAACGGG
TGAATATAAAATTAACTCAAACAAGTCAGTAGCCTTCCTTTATACAAATC
ATAAATGGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCACAATAGCC
ATAAATAGTATAAAATATCTTGGTGAAACTCTTACCAAGCAAATAAAAGA
TCTGTATAATAAGAACTTCAAGTCTCTCAGGAAAGAAATTGAAGAAGACC
TCAGAAGATAGAAAGATCTCCCATGCTCATGGATTGGTAGAATTAGCATA
GTAAATTTGTCCTTCTTACCCCCCCACTCTATATATTCAATGCAATCCCC
ATCAAAATTCCAACTCAATTACAAACACAAAGATAGAAAGGGCAGTTCTC
AACTTCATCTGTAATAACAAAAAACTCAGCATAGCAAAACCAGTTCTCAA
CAATAAAATAACTTCTGGGAGAATCATCATCCCTAGCCTCATGGTGTACC
CCAGAGTAATAGTGTTAAAATCCAAATGGTATTGGTACAGAGAAAGACAA
GGCGATCAATGAAATAGAATGGAAGTCCCAGAAATAACCCACACATCTCT
GGACAATTGATCTTTGACAAAGAAGCCAAAACCTTACAGTGGGGGAAAAA
AAAAAGAAAAGAAACATCTTCAACAAATGGTGTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_m08.b1 MSMg01no273_m08.b1 CHROMAT_FILE:
MSMg01no273_m08.b1 PHD_FILE: MSMg01no273_m08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:12 2005
         (314 letters)



>mm_chr4_72037519_72038233
          Length = 715

 Score =  586 bits (303), Expect = e-172
 Identities = 309/311 (99%), Gaps = 1/311 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatagattcttgtgcctctgcctcctgaatgctaggattaaaggcatgagccaac 64
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 gaattcatagattcttgtacctctgcctcctgaatgctaggattaaaggcatgagccaac 521

                                                                       
Query: 65  actgcttcacaagtcattacttaatttcttttattaatgatattaagaatcccaagag-a 123
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 520 actgcttcacaagtcattacttaatttcttttattaatgatattaagaatcccaagagaa 461

                                                                       
Query: 124 aaaaaatcccaattccttgtcatcatctggtgaacatgaaaggactctccaaaatttcag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 aaaaaatcccaattccttgtcatcatctggtgaacatgaaaggactctccaaaatttcag 401

                                                                       
Query: 184 ataatactcattagtactaggatatatcattattttcagacttctgggtttagagggaat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ataatactcattagtactaggatatatcattattttcagacttctgggtttagagggaat 341

                                                                       
Query: 244 gtggagcttgctcaggtgggatacagcagcacactggtgatcacctcccctcttcctgac 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 gtggagcttgctcaggtgggatacagcagcacactggtgatcacctcccctcttcctgac 281

                      
Query: 304 aaggcacctgc 314
           |||||||||||
Sbjct: 280 aaggcacctgc 270


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 715
Length adjustment: 9
Effective length of query: 305
Effective length of database: 706
Effective search space:   215330
Effective search space used:   215330
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)