BAC Information

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BAC

Clone NameMSMg01-273N19
Chromosome4 (Build37)
Map Location 83,649,837 - 83,797,131
singlet/doubletdoublet
Overlap geneLOC668010
Upstream geneFrem1, LOC667985, 1810054D07Rik, Snapc3, Psip1, LOC100040611, 4930473A06Rik
Downstream geneBnc2, LOC100040660, LOC624465, LOC100040284, D530005L17Rik, LOC622811
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273N19.T7 (MSMg01no273_n19.b1)MSMg01-273N19.TJ (MSMg01no273_n19.g1)
ACCAG412752AG412753
length730727
length of high quality
(start - end)		623 (71 - 693)292 (71 - 362)
definitionCHROMAT_FILE: MSMg01no273_n19.b1 PHD_FILE: MSMg01no273_n19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:19 2005CHROMAT_FILE: MSMg01no273_n19.g1 PHD_FILE: MSMg01no273_n19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:19 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,796,509 - 83,797,131)(83,649,837 - 83,650,127)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTTGCATTGCACGTGTTGCAGTGGTAGGTGGGTACACAGTCTGGAT
TTGTTTTATTTAATTAAAAATTAGCAAGTAATAAGGCAAATGATTTGGAA
CAGAATACTGTGTGTATACTAGTTTATCCCTTTCTATCTTTACAGTCTTT
ACAGGCCCAGGTTCTCCTGACTCCTCTTTCCCTGCAGCCCAACAGAGCAT
GCCTGGCTCTCTCCTCCCATCTCTCCTTTGCCACTCAACCCTTGGCTGCT
CAGTCAGTCATCAGGTTTTCTGGGAGTCAGAAACACCCGGGAGTGTGAGC
TCTGCAAAGCCACCCTCTCCCAGATGCCTCAGAAATAGCCTGGCTGCCAC
CTGCCTTCAGCCTGCTGTGATTCAGTGTCCCGGGTTTGCAGATGAGCTGG
GTGAGCGCCCTGTCAGTCCACATTGATTTTCCTGTAGATTACATTACCTC
CAATCACAAAAGAAATTGTGCTCCACTTCTGGAGTGTCAGGGCAGAATGG
ATAGCANACATTTTCCCACAAGCAGCTCTGCTCTCTTGTCCAAGGCTAAG
TCTTCCTCCCCCTGTCACCAAACCTTTTCTCTCCGCTCAGGGGACCAGTC
ACCAGGCTAAGATGGGCATCACTTCCAACTTGGATCGGGCAGGATACCCA
ATTACCCCTCAGTGAGATTGCTCAGTGTCC

GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTAGAAGTAGCCTTCCTTAGGGGTGACCT
ATCTGAAAGCAACAATGGAACCTGCTGCTGCCATCTCTCATGTGAGAGGA
TATGGCTTAAGAGAGATGGTGTTAACAAACCGGCAGAGAGAAGGTTGAAG
CCCCAGAGACTACCCTCTCTCTGCTCTTGAGGTGATGTGTGTGGCCAATT
TCTTAGGGCTTCAGAAATTCCGATTCAAACTCTTCTCTTTCCTGCCTTGA
CTCTCTCCAAATCTTCCGAGTGGATTGGGAACTCAGAACTTTTTTTGTTA
TTGTTGAACTGTTGTTCTAGGGCCCCCCACCTGGCTCCCATCAACAACAT
CTGGTATTAATTGTCTTATCTGTCGTCATAAAGTATGGGCTTTGTAAGGG
TAGGGAATCTATTTTGTTCAAAATTGTCAGTTTGCTCCCCTCTCCTCAGA
GACTCCCTTATCCCTGTTACAAAGTAAGACACCCCACAAATGTTTGTAGG
ATTGAGTTCGGCAACTGCTCCCCCCTGTACCCCGATTCTGTTATCCCAAT
TGTCACCTCTCTTCTATCCTGTTCTAATTCTTCTCACACTGTTTCTCACT
GGACAGTGCACTTTGCTTAAGCTGAGTCATAGCTCCCAGGCCCTCTCTCT
GACTCTGAAATCCCACACAGCTCTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_n19.b1 MSMg01no273_n19.b1 CHROMAT_FILE:
MSMg01no273_n19.b1 PHD_FILE: MSMg01no273_n19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:19 2005
         (623 letters)



>mm_chr4_83796309_83797331
          Length = 1023

 Score = 1145 bits (592), Expect = 0.0
 Identities = 615/623 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcagtggtaggtgggtacacagtctggatttgttttatttaattaaaaattagcaagta 60
           |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 823 tgcagtggtaggtgggtacacagtctggattttttttatttaattaaaaattaggaagta 764

                                                                       
Query: 61  ataaggcaaatgatttggaacagaatactgtgtgtatactagtttatccctttctatctt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 763 ataaggcaaatgatttggaacagaatactgtgtgtatactagtttatcccttcctgtctt 704

                                                                       
Query: 121 tacagtctttacaggcccaggttctcctgactcctctttccctgcagcccaacagagcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 tacagtctttacaggcccaggttctcctgactcctctttccctgcagcccaacagagcat 644

                                                                       
Query: 181 gcctggctctctcctcccatctctcctttgccactcaacccttggctgctcagtcagtca 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 643 gcctggctctctcctcccatctctcctttgccactcaacccttgactgctcagtcagtca 584

                                                                       
Query: 241 tcaggttttctgggagtcagaaacacccgggagtgtgagctctgcaaagccaccctctcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 tcaggttttctgggagtcagaaacacccgggagtgtgagctctgcaaagccaccctctcc 524

                                                                       
Query: 301 cagatgcctcagaaatagcctggctgccacctgccttcagcctgctgtgattcagtgtcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 cagatgcctcagaaatagcctggctgccacctgccttcagcctgctgtgattcagtgtcc 464

                                                                       
Query: 361 cgggtttgcagatgagctgggtgagcgccctgtcagtccacattgattttcctgtagatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 cgggtttgcagatgagctgggtgagcgccctgtcagtccacattgattttcctgtagatt 404

                                                                       
Query: 421 acattacctccaatcacaaaagaaattgtgctccacttctggagtgtcagggcagaatgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 acattacctccaatcacaaaagaaattgtgctccacttctggagtgtcagggcagaatgg 344

                                                                       
Query: 481 atagcanacattttcccacaagcagctctgctctcttgtccaaggctaagtcttcctccc 540
           |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 343 atagcaaacattttcccacaggcagctctgctctcttgtccaaggctaagtcttcctccc 284

                                                                       
Query: 541 cctgtcaccaaaccttttctctccgctcaggggaccagtcaccaggctaagatgggcatc 600
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 283 cctgtcaccaaaccttttctctctgctcaggggaccagtcaccaggctaagatgggcatc 224

                                  
Query: 601 acttccaacttggatcgggcagg 623
           |||||||||||||||||||||||
Sbjct: 223 acttccaacttggatcgggcagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space:   620969
Effective search space used:   620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no273_n19.g1 MSMg01no273_n19.g1 CHROMAT_FILE:
MSMg01no273_n19.g1 PHD_FILE: MSMg01no273_n19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:19 2005
         (292 letters)



>mm_chr4_83649637_83650328
          Length = 692

 Score =  555 bits (287), Expect = e-162
 Identities = 290/291 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctagaagtagccttccttaggggtgacctatctgaaagcaacaatggaacctgctgctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctagaagtagccttccttaggggtgacctatctgaaagcaacaatggaacctgctgctg 260

                                                                       
Query: 61  ccatctctcatgtgagaggatatggcttaagagagatggtgttaacaaaccggcagagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccatctctcatgtgagaggatatggcttaagagagatggtgttaacaaaccggcagagag 320

                                                                       
Query: 121 aaggttgaagccccagagactaccctctctctgctcttgaggtgatgtgtgtggccaatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaggttgaagccccagagactaccctctctctgctcttgaggtgatgtgtgtggccaatt 380

                                                                       
Query: 181 tcttagggcttcagaaattccgattcaaactcttctctttcctgccttgactctctccaa 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcttagggcttcagaaattccaattcaaactcttctctttcctgccttgactctctccaa 440

                                                              
Query: 241 atcttccgagtggattgggaactcagaactttttttgttattgttgaactg 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcttccgagtggattgggaactcagaactttttttgttattgttgaactg 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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