BAC Information

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BAC

Clone NameMSMg01-273O24
Chromosome4 (Build37)
Map Location 114,727,992 - 114,728,306
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040625, A630098G03Rik, LOC666048, Foxd2, LOC100040736, Foxe3, Cmpk, Stil
Downstream geneTal1, Pdzk1ip1, Cyp4x1, Cyp4a21-ps, LOC384042, LOC230639, Cyp4a12, LOC546842, Cyp4a12b, LOC435802, LOC666393, LOC230641, Cyp4a14, Cyp4a10, LOC666168, LOC631037, LOC100040843, Cyp4b1, LOC546843, 4732418C07Rik, 4930544O15Rik, Atpaf1, Mobkl2c, Mknk1, Kncn, 6430628N08Rik, Dmbx1, Faah, Nsun4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273O24.T7 (MSMg01no273_o24.b1)MSMg01-273O24.TJ (MSMg01no273_o24.g1)
ACCAG412807AG412808
length748737
length of high quality
(start - end)
321 (37 - 357)290 (67 - 356)
definitionCHROMAT_FILE: MSMg01no273_o24.b1 PHD_FILE: MSMg01no273_o24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:24 2005CHROMAT_FILE: MSMg01no273_o24.g1 PHD_FILE: MSMg01no273_o24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGCT
ATTTTTGCCCTTATCTTTTGGATTACAACAGCCAGTTTCCACCATCATAG
AAAAAAAACCCCAGATACTCCTCAGCCCATTGGGTTCCTACAATGTACCT
ATGGGCTTCAATGTCAAACTTCTTTCAAATCAGGCTTCTGTCCCTCACTA
GAAATTTAATATTGAGTTATTGACACAGCCCTGTCACCCCCTCCCCCCAC
TGTTTTCTCACCTGTAAATTAGGAATAATAAAAGCACCAATGGGGAGAAG
TTGGATGAAGGGGGAAAAGTATCACTAGAGCACACTATTATTCAAAGGTG
CCCTATTGTTATCCCACCCGCCCGCCATTTAAAAAATAAAAAATAAAAGC
ATTACGAAACCGGGTGTGGTAGAAACAAGACTTTAATCCCAGCACTCCAG
AGGCAGAGACAGGTGGATCCCTAAGTTCGAAGACAGCCTGGTCTACAGAA
AGAGTTTCAGGACAGCCAAGGCTACACAGACAAACCCCATCTCAAACAAA
ACAACAAAAACCAGAAAGAGAAAGAAAAGAGCTAATTTAGAATTTTCTCA
TTTATACACTTGCTTATTTTTATTTTTGCAGTGCTGAGAATTGAGTCCTT
GGCCTTGCACAGGATTGGCAAGCCCTCAAACTCCAGTCCTTAGGGATATT
TAAGGAAAACCAAACTGTATAGTGCAGAGAAACAATGTACCAAGATTA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCTGTTTAGCTCTGTTTCCCATTTTTAATAGGGT
TATTTGGTTGGCTGGAGTAATTCTTTATATATATTGGATATTAGCCCTTT
ATTGGATGTAGGATTGGTAAAGATCTTCTCCCCATCTGTTGGTTGCAGAA
ATGCACACTCTTAATAGTTAAAGTAGATTTTGTTTTGTTTTGTTTTGTTT
TGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTAAGATCAGGGAAC
AGGAACAATGGTAGCCAGACCAGCACTAGCTGACTCCTTGCTAGAGCTGG
GCTGTTGGTATGGTCACCCCCCCCTTCTTGTATGCATTTTTGTCCTCAGC
TTCCTGATATGATTTAATCAAAAAAATTGTTAATGAGTAGATGTGCACCC
TGAGGATTTAAAGTAGAAATTACTGATTGTTTTTTATATAAAAGTTTAGA
TCTGTCTGTGATTCTTCTAAGATTTTTTTATAAGATTACTTTTTAGGATA
TATAATAAAGCAATTGATTCTTTCTCTGTATCCACAAATTACTGCCTGCC
AGTAAGAGAATCTGACTGCGGAAATTACCTTGCTTGCCTACCCTTTGGTA
ATCTATAACAGATTGTTTAACTGTGGATGTACGGGGATTCTTGCGAATAA
TATTTTTTGTCTCGACTATCACCGGCTTCCTGGAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_o24.b1 MSMg01no273_o24.b1 CHROMAT_FILE:
MSMg01no273_o24.b1 PHD_FILE: MSMg01no273_o24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:24 2005
         (321 letters)



>mm_chr4_114727788_114728508
          Length = 721

 Score =  580 bits (300), Expect = e-170
 Identities = 312/316 (98%), Gaps = 2/316 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgctatttttgcccttatcttttggattacaacagccagtttccaccatcatag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgctatttttgcccttatcttttggattacaacagccagtttccaccatcatag 264

                                                                       
Query: 65  aaa-aaaaaccccagatactcctcagcccattgggttcctacaatgtacctatgggcttc 123
           ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaagaaaaaccc-agatactcctcagcccattgggttcctacaatgtacctatgggcttc 323

                                                                       
Query: 124 aatgtcaaacttctttcaaatcaggcttctgtccctcactagaaatttaatattgagtta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aatgtcaaacttctttcaaatcaggcttctgtccctcactagaaatttaatattgagtta 383

                                                                       
Query: 184 ttgacacagccctgtcaccccctccccccactgttttctcacctgtaaattaggaataat 243
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 384 ttgacacagccctgtcaccccctccccccactgttttctcacctataaattaggaataat 443

                                                                       
Query: 244 aaaagcaccaatggggagaagttggatgaagggggaaaagtatcactagagcacactatt 303
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 444 aaaagcaccaatggggagaagttggatgaagggggaaaagtatcactaaagcacactatt 503

                           
Query: 304 attcaaaggtgcccta 319
           ||||||||||||||||
Sbjct: 504 attcaaaggtgcccta 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)