XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTA
GGATTACCTTCTGTGTTAAGTAAGAATGTGATTATATTTTTGCCTGCCAC
TAATAATTTACTTCTTATATCTTATTTATGTATATTTTTCATTAAAAATC
ATTAGACTGAAATTAGAGACACTGATAAGTAGTATATACCTTGTCCTTGT
CAAAGATCTCACACACAAAAATATATTAGCCTTGCAGTCATTTGGAAAAG
CAAGCTTGCAAGTCATAGCTGGCTGTGTGCCTGATAATGAACACTGAGAT
TCTAATCAGGTTTTTCTCTGGGCTGATAATAATATTGCATCATGGTCCCA
CTACTGCCCTGTAGAGGACATTCTTTATTTTGCTTTTTGCTAAGTATCCT
CTGGGCCTTAGGCACATTATTTGACTATATTGATTTTTACATTTTGAGAA
CTGTGAATATAGAGGTTGGGTTTGATTAGAGCTAGAACAAAGGTCAGCCA
AGTTTCTGTATAGAGTATCTGATAGTAAACACTGTAGGCTTTCAGCCTGT
GTTGTGTCTGCAGCAACTAAAGGAATCATAGATAAGAGTAGGCAAATAGT
TATGTCAGCATTTCAGGAAAATGTATATCCCTCGGTGGCTGCTCACTTGA
ACTATTGGCCATGCGGATACCCTGAGTGTTCTTTTTTGTAAGAATCAAGA
CCTCATACTTCAATGTCCCTGGCGACATAGA

GTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAAATAGATCCGTTGCATTTGTGTGTGTGTGCATG
TGTGTGTGTGTGTGTGCCGAGAGAGAGAGCCTGCACAAAATTGAAGTCCA
AGTGAATCAATAAGACTTGAATATAAAGCCAGCCACACTAAATCTGATAA
GAAGAGAAAATGGGGAACAGACTTGAAAGCACTGGCACGGGAGAAAGCTT
CCTAAATAGAACACCAACAGCTTGAGCACTAAGATCAACAACTAAGAAAT
AGGAAACAGAAAACTTTCTGTAAGGCTATAGGACACTGGCTATAGGACAA
AATGCCATTCTACTGAATGGAAAAGATTGTTACCAACTCCACATCTGTCA
GAAGGTTAATATTCCAGATATACAAAGAATTCAAGAAACTAGACATCAAC
AAGACAAATATCCCAATTAAAAATGGGATACAGCTCTATACAGAGAATTC
TGGAAGAAGAATCTTGAATGGAGCACTTAAAGAAATGTTCAACATTCTTG
CCAATCAGAGAATTGCAAATAAAAATGACTCTGAGATTCCATCTTATACA
GCCAGAATGACTAAGATAACAAGTTCAAGCATACTCAAGAATACTCCATT
GCTGTTGGGAGCGCAAACCTATGCAACCCCTTTTGGAAATTAATTTGGTG
ATTTCTCACAAAGTTTGCCATAGATCTACATCAN

Query= MSMg01no273_p06.b1 MSMg01no273_p06.b1 CHROMAT_FILE:
MSMg01no273_p06.b1 PHD_FILE: MSMg01no273_p06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:25 2005
         (488 letters)



>mm_chr4_97157942_97158829
          Length = 888

 Score =  919 bits (475), Expect = 0.0
 Identities = 481/483 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctctaggattaccttctgtgttaagtaagaatgtgattatatttttgcctgcca 63
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 ggaattctctaggactagcttctgtgttaagtaagaatgtgattatatttttgcctgcca 627

                                                                       
Query: 64  ctaataatttacttcttatatcttatttatgtatatttttcattaaaaatcattagactg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ctaataatttacttcttatatcttatttatgtatatttttcattaaaaatcattagactg 567

                                                                       
Query: 124 aaattagagacactgataagtagtatataccttgtccttgtcaaagatctcacacacaaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 aaattagagacactgataagtagtatataccttgtccttgtcaaagatctcacacacaaa 507

                                                                       
Query: 184 aatatattagccttgcagtcatttggaaaagcaagcttgcaagtcatagctggctgtgtg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 aatatattagccttgcagtcatttggaaaagcaagcttgcaagtcatagctggctgtgtg 447

                                                                       
Query: 244 cctgataatgaacactgagattctaatcaggtttttctctgggctgataataatattgca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 cctgataatgaacactgagattctaatcaggtttttctctgggctgataataatattgca 387

                                                                       
Query: 304 tcatggtcccactactgccctgtagaggacattctttattttgctttttgctaagtatcc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tcatggtcccactactgccctgtagaggacattctttattttgctttttgctaagtatcc 327

                                                                       
Query: 364 tctgggccttaggcacattatttgactatattgatttttacattttgagaactgtgaata 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tctgggccttaggcacattatttgactatattgatttttacattttgagaactgtgaata 267

                                                                       
Query: 424 tagaggttgggtttgattagagctagaacaaaggtcagccaagtttctgtatagagtatc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tagaggttgggtttgattagagctagaacaaaggtcagccaagtttctgtatagagtatc 207

              
Query: 484 tga 486
           |||
Sbjct: 206 tga 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space:   419684
Effective search space used:   419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)