Query= MSMg01no274_g07.b1 MSMg01no274_g07.b1 CHROMAT_FILE:
MSMg01no274_g07.b1 PHD_FILE: MSMg01no274_g07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:55 2005
(234 letters)
>mm_chr4_48138196_48138830
Length = 635
Score = 431 bits (223), Expect = e-125
Identities = 232/237 (97%), Gaps = 5/237 (2%)
Strand = Plus / Minus
Query: 1 ggcatgggccaccaaggcctccagcaacttctgcaacttttcaataattgcaaatgactc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ggcatgggccaccaaggcctccagcaacttctgcaacttttcaataattgcaaatgactc 376
Query: 61 caaa---ggttttgtctggtgtttgtgcatgtataataattgctgtttcatggatgaaag 117
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 caaattt--ttttgtctggtgtttgtgcatgtataataattgctgtttcatggatgaaag 318
Query: 118 aacgtgtagaagacaggcctgcagtcattttccaagcacacacatttgcagtgagaggtg 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 aacgtgtagaagacaggcctgcagtcattttccaagcacacacatttgcagtgagaggtg 258
Query: 178 tcaagtgctttttataaacttaatctcttggtacttgcaactaagatgatatgggta 234
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tcaagtgctttttataaacttaatctcttggtacttgcaactaagatgatatgggta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 635
Length adjustment: 9
Effective length of query: 225
Effective length of database: 626
Effective search space: 140850
Effective search space used: 140850
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no274_g07.g1 MSMg01no274_g07.g1 CHROMAT_FILE:
MSMg01no274_g07.g1 PHD_FILE: MSMg01no274_g07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:55 2005
(248 letters)
>mm_chr4_47991738_47992394
Length = 657
Score = 387 bits (200), Expect = e-112
Identities = 240/260 (92%), Gaps = 15/260 (5%)
Strand = Plus / Plus
Query: 1 attcttggtacagacttaccaat-----gtggggtggagggcaagcaaatgtttacccta 55
||||||||||||||||||||||| | ||||||| ||||||||||||||||| |||
Sbjct: 201 attcttggtacagacttaccaatggggggaggggtggggggcaagcaaatgtttatgcta 260
Query: 56 aaaatatgaagtgaattataagggggtctacacagacatggagagagtcaacttaacttg 115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaatatgaagtgaattataagggggtctacacagacatggagagagtcaacttaacttg 320
Query: 116 agcatacag--tttaaaaaaaaagtatccactc----c-tgtttttcaaatgcaacataa 168
||||||||| ||| |||||||||||||||| | |||||||||||||||||||||
Sbjct: 321 agcatacagttttt---aaaaaagtatccactcttgacttgtttttcaaatgcaacataa 377
Query: 169 tggagacatacaaataaggatgtctgtgggcaattattagaattttaggtggatcataga 228
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tggaggcatacaaataaggatgtctgtgggcaattattagaattttaggtggatcataga 437
Query: 229 gcttagtaagctgaaacagg 248
||||||||||||||||||||
Sbjct: 438 gcttagtaagctgaaacagg 457
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 657
Length adjustment: 9
Effective length of query: 239
Effective length of database: 648
Effective search space: 154872
Effective search space used: 154872
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
