BAC Information

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BAC

Clone NameMSMg01-274K19
Chromosome4 (Build37)
Map Location 120,258,012 - 120,258,363
singlet/doubletsinglet
Overlap genenone
Upstream geneFoxj3, Guca2a, Guca2b, Hivep3, Edn2, Foxo6, Scmh1, Slfnl1, Ctps
Downstream geneEG667063, Cited4, Kcnq4, Nfyc, Rims3, LOC626489, 3110037I16Rik, Zfp69, Smap1l, Col9a2, Zmpste24, Tmco2, LOC100042174, Rlf, OTTMUSG00000008911, EG666914, LOC666921
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274K19.T7 (MSMg01no274_k19.b1)MSMg01-274K19.TJ (MSMg01no274_k19.g1)
ACCAG413337AG413338
length753756
length of high quality
(start - end)		376 (37 - 412)640 (65 - 704)
definitionCHROMAT_FILE: MSMg01no274_k19.b1 PHD_FILE: MSMg01no274_k19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:15 2005CHROMAT_FILE: MSMg01no274_k19.g1 PHD_FILE: MSMg01no274_k19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGTA
GAATGGTCGGAGAAAGGATTATAGAAGGCAGGGGAGTCAAGAAACCCCAC
AAAATCTACTATCATACACTCAGAGAGACTGAACTGCCCAATGTGATTGA
TGTAGGCCCTCTGCATAGGTGTAGCTTGGTGTTGCAGGACTCCTAATAGT
AGTAGAAAGGGCTGTCTCTGACTCTTTTGCCTGCTTTTGGAACCCTGTTT
TATCCTAATGAGGGTGGGTTGCCTCATCCAGCATTAATATGAGGGGGAAG
TACCTAATCCTATTGCAACTTGACATGCCATATTTGGTTGATATGCCTGG
GAGGCCTGTCTTTTTCTGAAGGGAAATGGAGGAAGAGTGGATGAGGGTGG
GTGGGAATGCCCACCGACGACAAAAAAGAAACCAACAGGGGGGGCGTAAC
AACCACCCCTAAAAACGGCCCCACCATCACGCACCGAACCCTAACGCGAC
CTTGCACAACCTACCATTCTTATCTCCATCTCATCTTTTATAACTGTATC
ATCAATCTCTGTCATTGTTCTACGTTACCTTTTCATTTATCTACTCCCTT
TTTCTTTCAATCCTCTTTTCACCTTTTTTTCCTACCCTTCTCCCTCCTCT
ATCATGTTTCATTTTATCTTTCTCCCTCCGCCTTCCTCCGCCATGAAGTA
TCAATTTCCCCTCTACCTTCTTTCCCCCTTTCACTCTTCTCGATTCCCTT
CCG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTCTTCCCTAAAGATAGATACTCTCATCTTTGATGAA
ATGACTCGTGCATTCTATTCCTTGTGGATAGGACCTTATATACATTTTGG
GGTGGGTTGGTCTTGCGCGCGCTCGACTGGCCAGGAAGAACGATGCTGCA
ACAGGATCCTCTGTACACGTTTATTGGGAGAGCTCGATTGTAGAGGCGAA
AAGACCCCGAGCCCAGAACTGGTGCTGCTTATATAGGCCTAGGAGAGGCG
TGTCTCACATCTGATTGGTTAACTTGTCTCTCATCTTGGCAAAAGAACCT
TCACTGCCTATGTATGTGTGGTGGCCAGCAGTAGCCAACTGCCACTCTGC
AACTGCCACTCTGCAACGGCTTCCCACAGGTTGGGGTCTAAAGCAGATAC
TTTCTATTGTCTTGGTCTGAGATGTTAGGGGTGCCTCATCTGCATGTGAA
GGGGCTTCAGGTGTTGCCCCTGCATGACTGTCACAGCCCTCAACATGGGG
TGTCATGCTCCAGGGTAGGAACCTGGACAGGTGTAGATGGAAGGCCTGCC
GTTCTCAGATTCGAGAATTACTGGGATTTCTGAATCTGCTCAACTTTACC
AAGTATTCTGTCTGGTGGCACAGTCCACTGCCCCACAGGCATGTGACACC
ACCACCTGACCCATAGAACAGTTTTGTCATGTATTTATAAGCTTAAAAAA
TAAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_k19.g1 MSMg01no274_k19.g1 CHROMAT_FILE:
MSMg01no274_k19.g1 PHD_FILE: MSMg01no274_k19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:15 2005
         (640 letters)



>mm_chr4_120257324_120258363
          Length = 1040

 Score =  615 bits (318), Expect = e-180
 Identities = 342/352 (97%), Gaps = 4/352 (1%)
 Strand = Plus / Minus

                                                                        
Query: 293  cctatgtatgtgtggtggccagcagtagccaactgccactctgcaactgccactctgcaa 352
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1040 cctatgtatgtgtggtggccagcagtagccaactgccactctgcaactgccactctgcaa 981

                                                                        
Query: 353  cggcttcccacaggttggggtctaaagcagatactttctattgtcttggtctgagatgtt 412
             |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 980  tggcttcccacaggttgaggtctaaagcagatgctttctattgtcttggtctgagatgtt 921

                                                                        
Query: 413  aggggtgcctcatctgcatgtgaaggggcttcaggtgttgcccctgcatgac----tgtc 468
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||    ||||
Sbjct: 920  aggggtgcctcatctgcatgtgaaggggcttcaggtgttgcccctacatgactgattgtc 861

                                                                        
Query: 469  acagccctcaacatggggtgtcatgctccagggtaggaacctggacaggtgtagatggaa 528
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860  acagccctcaacatggggtgtcatgctccagggtaggaacctggacaggtgtagatggaa 801

                                                                        
Query: 529  ggcctgccgttctcagattcgagaattactgggatttctgaatctgctcaactttaccaa 588
            |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 800  ggcctgccgttctcagatacgagaattactggggtttctgaatctgctcaactttaccaa 741

                                                                
Query: 589  gtattctgtctggtggcacagtccactgccccacaggcatgtgacaccacca 640
            ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740  gtattctgtctggtggcacagtccactgccccacaggcatgtgacaccacca 689


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space:   648900
Effective search space used:   648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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