BAC Information

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BAC

Clone NameMSMg01-274M18
Chromosome4 (Build37)
Map Location 15,513,327 - 15,513,631
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc26a7, 1700034K16Rik, Otud6b, LOC100040047, Tmem55a, OTTMUSG00000004551, Efcbp1, Tmem64
Downstream geneLOC100040095, LOC633695, Calb1, Decr1, Nbn, Osgin2, Ripk2, LOC667150, LOC383994
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274M18.T7 (MSMg01no274_m18.b1)MSMg01-274M18.TJ (MSMg01no274_m18.g1)
ACCAG413424AG413425
length751751
length of high quality
(start - end)
318 (37 - 354)292 (427 - 718)
definitionCHROMAT_FILE: MSMg01no274_m18.b1 PHD_FILE: MSMg01no274_m18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:24 2005CHROMAT_FILE: MSMg01no274_m18.g1 PHD_FILE: MSMg01no274_m18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCAT
GATATGTACTCACTGATAAGTGGATATTAGCCCAGAAACTTAGAATACCC
AAGATACAATTTGCAAAACACGTGAAACTCAAGAAGAACGAAGACCAAAG
TGTGGACACTTTGCCCCTTCTTAGAATTGGGAACAGAATACCCATGGAAG
GAGTTACAGAGACAAAGTTTGGAGCTGAGACGAAAGGATGGACCATCTAG
AGACTGCCATACCCGGGGATCCATCCCATAATCATTCTCCAAACACAGAT
ACCATTGCATACACCAGCAAGATTCTTCTGAAAGGACCCTGATATAGCTG
TCTCTTGTGAGGCTATGCCACCGCCTGGCAAACACAGAAGTGGATGCTCA
CAGTCAGCTATTGGATGGATCACATGGCCCCCAATGGAGGACCTAGAGAA
AGTACCCAAGGAGCTGAAGGGGTCTGCAACCCTATAGGTGGAACAACAAT
ATGAACTAACCAGCACCCCCTGGAGCTCATGTCTCTAGCTGCATATGTAG
TAGAAGATGGCCTAATCAGCCATCATTAGGAAGAAAGGCCCCTGGGTCTT
GCAAACTTTATATGCCTCAGTATAGGGGAACACCAGGGCCAAGAACTGGG
AGTGGGTGGGTAGGGGAGTCGGGGGGGGAGGTTATTTTCTCTCCCTCTTT
TTTTTTTTTCTTCCCACCTTATCTCCCCGGTTCTGTACTCCGTCTCTTGT
T
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCATCCTTTATTATTAATTAATAATTAATTAATT
AAATGCTCAAGATGGACTCCTGCATAAAAATACATCTTGGAAGAGTCATG
ACTTGGAAAGGATTTTCATTTTCTATGCTACTGGATTTTCACTCTTTACT
GATTTTCCATATTTAGCATAAATTTATTTTTAGAGTATTCTATCAACTTT
TCTATATTTACATTAGATTGCAACCAATGTCCCTGAATTCATCAGATGCC
AAAGGTCAAACTTGTTTTCAAGACTATGGGGAAGTTTTTTTCCTAACTTA
TCTTATATTTTGTACTCCACACCGCCTTGGCTTATGGCTGCATAACTCCA
GTCTCTGCTTCCTTATAGAGACCTTCTATTCTGGGTCTTCTTCTTTTCAG
TATCTTCAGTGAATATTGCCATGCCTATGTGAAATATCCAGGGTGATTTC
ATCTTGAGGTATTTAGTAATGTCCACCAAGACCCTTTTGCTAAGTAAAGT
TATACCCACAACTCCTGGGACTTAAGATAGGTATACATATTTTAGGAGCA
TCCATCCTTCCCATTAATGGGATGAGAGTTTAGGACCTATCTTATATTTG
TTTATGTCAGGGTACAATATATCTGGCTTTCCTCAAGTGCGATGATGTAG
GGTTGCCTCTGTAACACTGTGCTCAGAAGCTGATTCCCATTCCATCAGCC
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_m18.g1 MSMg01no274_m18.g1 CHROMAT_FILE:
MSMg01no274_m18.g1 PHD_FILE: MSMg01no274_m18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:24 2005
         (292 letters)



>mm_chr4_15513161_15513852
          Length = 692

 Score =  478 bits (247), Expect = e-139
 Identities = 285/305 (93%), Gaps = 13/305 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   tattctgggtcttcttcttttcagtatcttcagtgaatattgccatgcctatgtgaaata 60
           ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 471 tattctgggtcttcttcttttcagtgtcttcagtgaatattgccatgtctatgtgaaata 412

                                                                       
Query: 61  tccagggtgatttcatcttgaggtatttagtaatgtccaccaagacccttttgctaagta 120
           |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct: 411 tccagggtgatttcatcttgagttatttagtaatgcccaccaagacccttttgctaagta 352

                                                                       
Query: 121 aagttatacccacaactcctgggacttaagataggtatacatattttaggagcatccatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 aagttatacccacaactcctgggacttaagataggtatacatattttaggagcatccatc 292

                                                                       
Query: 181 cttcccattaatgggatgagagtttaggacctatcttatatttgtttatgtcagggtaca 240
           |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 291 cttcccattaatggaatgagagtttaggacctatctcatatttgtttatgtcagggtaca 232

                                                                       
Query: 241 atatatctggctttcctcaagtgc---gatg----------atgtagggttgcctctgta 287
           ||||||||||||||| ||||||||   ||||          |||||||||||||||||||
Sbjct: 231 atatatctggctttcttcaagtgcaatgatgcgggacttagatgtagggttgcctctgta 172

                
Query: 288 acact 292
           |||||
Sbjct: 171 acact 167


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)