Query= MSMg01no274_p17.b1 MSMg01no274_p17.b1 CHROMAT_FILE:
MSMg01no274_p17.b1 PHD_FILE: MSMg01no274_p17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:38 2005
(692 letters)
>mm_chr4_124601379_124602470
Length = 1092
Score = 1282 bits (663), Expect = 0.0
Identities = 685/697 (98%), Gaps = 8/697 (1%)
Strand = Plus / Plus
Query: 4 ggaattctcatgctttcccgtcccaaattctgggattagaagtgtatgccctcatttttg 63
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 ggaattctcatgctttagcgtcccaaattctgggattagaagtgtatgccctcatttttg 255
Query: 64 ggccaactctgtctcattcagaatgctggactagccctacagtactattatgtagttctt 123
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ggccaactctgtcttattcagaatgctggactagccctacagtactattatgtagttctt 315
Query: 124 caactactccgattgttgattgttaatttttactttatgtgtgcaatacataagattatg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 caactactccgattgttgattgttaatttttactttatgtgtgcaatacataagattatg 375
Query: 184 tacacatcacatgcttacctggggccgaggaagtcagaggaggggatcggatcccctgga 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tacacatcacatgcttacctggggccgaggaagtcagaggaggggatcggatcccctgga 435
Query: 244 actggagtcacaggtaggtgtgagctaccacattattgctgggaacttaatctgaatcca 303
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 436 actggagtcacaggtaggtgtgagctaccacattagtgctgggaacttaatctgaatcca 495
Query: 304 ctgcgagggcaacaagtgatcgtaaccacaccctctctagccctctaggaaatctttaat 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ctgcgagggcaacaagtgatcgtaaccacaccctctctagccctctaggaaatctttaat 555
Query: 364 aaaagaggatttaaacaaaggcaaacaatcaacaatcggagtggttgaagcgtgcgtgca 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 aaaagaggatttaaacaaaggcaaacaatcaacaatcggagtggttgaagcgtgcgtgca 615
Query: 424 tgcgtgcatgc--------ttagcccaggctggcctcatactcactctgtagctgaggct 475
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tgcgtgcatgcgtgcatgcttagcccaggctggcctcatactcactctgtagctgaggct 675
Query: 476 gagcttgaactactcagacccctgcctccacctcccaagtactaggatgacaggtgtgtg 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 gagcttgaactactcagacccctgcctccacctcccaagtactaggatgacaggtgtgtg 735
Query: 536 tcccaccaagtgtggttttgttgttcattttaaaacagcttcctacgtagctgtaacgtc 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 tcccaccaagtgtggttttgttgttcattttaaaacagcttcctacgtagctgtaacgtc 795
Query: 596 aaagagttataagaacacttgttaaccgttggttgatgagggcttgctgtatttagtctt 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 aaagagttataagaacacttgttaaccgttggttgatgagggcttgctgtatttagtctt 855
Query: 656 ggggtgaaatcagaagacacagtctacctgctaaccc 692
|||||||||||||||||||||||||||||||||||||
Sbjct: 856 ggggtgaaatcagaagacacagtctacctgctaaccc 892
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1092
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1082
Effective search space: 737924
Effective search space used: 737924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no274_p17.g1 MSMg01no274_p17.g1 CHROMAT_FILE:
MSMg01no274_p17.g1 PHD_FILE: MSMg01no274_p17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:38 2005
(352 letters)
>mm_chr4_124743984_124744737
Length = 754
Score = 607 bits (314), Expect = e-178
Identities = 344/354 (97%), Gaps = 2/354 (0%)
Strand = Plus / Minus
Query: 1 tgttttctttcttcgagttagagcctgcccaacttcgccaaggaaaaagcatctctcttt 60
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 tgttttccttcttcgagttagagcctgcccaacttcgccaaggaaaaagcatctctcttc 495
Query: 61 tttgccttgtggcccagtacctccaattgatctttaacccacactacgcactcaataaat 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tttgccttgtgacccagtacctccaattgatctttaacccacactacgcactcaataaat 435
Query: 121 cgatgctacatggaggcattggcgaatgagtgctgcgaagaagtcgccaagacccaacgt 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 cgatgccacatggaggcattggcgaatgagtgctgcgaagaagtcgccaagacccaacgt 375
Query: 181 gtctttgtaggcagacgaggggagaagccactcgcaccatccactcgcgggcaggcgggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 gtctttgtaggcagacgaggggagaagccactcgcaccatccactcgcgggcaggcgggg 315
Query: 241 g-aatcttatttcaactcaacaggtgctctgcactccggaacagctcgcaccaccggccc 299
| ||||| ||||||||||||||||||||||||||||| || | |||||||||||||||||
Sbjct: 314 gaaatctcatttcaactcaacaggtgctctgcactccagagccgctcgcaccaccggccc 255
Query: 300 ccgcgccat-ccgtcctccgcccaatcaccggctcgcttaccgggctcggctcc 352
||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 ccgcgccatcccgtcctccgcccaatcaccggctcgcttaccgggctcggctcc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 754
Length adjustment: 9
Effective length of query: 343
Effective length of database: 745
Effective search space: 255535
Effective search space used: 255535
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
