BAC Information

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BAC

Clone NameMSMg01-275C17
Chromosome4 (Build37)
Map Location 142,079,652 - 142,079,886
singlet/doubletsinglet
Overlap genenone
Upstream geneSpen, LOC100042951, B330016D10Rik, Fblim1, BC025833, Slc25a34, Plekhm2, Ddi2, Agmat, Dnajc16, Casp9, Ela2a, Ctrc, Efhd2, Fhad1, Tmem51, 9030409G11Rik, EG665983
Downstream geneLOC546484, 6330411D24Rik, Prdm2, LOC666018, EG626575, LOC433776, Pdpn, Lrrc38, LOC621961, Pramel1, 4732496O08Rik, Oog4, LOC666015
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275C17.T7 (MSMg01no275_c17.b1)MSMg01-275C17.TJ (MSMg01no275_c17.g1)
ACCAG413696AG413697
length757759
length of high quality
(start - end)
238 (122 - 359)291 (68 - 358)
definitionCHROMAT_FILE: MSMg01no275_c17.b1 PHD_FILE: MSMg01no275_c17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:51 2005CHROMAT_FILE: MSMg01no275_c17.g1 PHD_FILE: MSMg01no275_c17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCT
CTGCATTTTCACCCTGGGTTCTCAGAGCCAGTTGTCTAGTTAAGACACAC
AATTAACAGGAATTTATCCCATGTAGAAGTCTATTTGATGGGAAAATTGT
ATCAAGCAATTGTCTACTCGTCTGCCTTATTTTATGCCAGGGACGTGTAA
AACAATTTATAAGGCAACTCTTGGCACCCCAAGCCCATATTACTAAGTGT
GTGTGCTGTCAGGAGGAGCTTGTGTCTGTTCAGATCGATGTGAGCTATGC
TGTACTCTCCCATCCTGTGATCTGGACGGCACTGGGACCCCCACTGTCCA
GTGGTATTTTTTTACTGATACCCCTCTTTTGAGAAACAAACACATAGAAG
CTTTGCTTTTAAAGGGGACAAGTGAAAACGAGCAATGTATGTAGTAAAGT
AAACGATTGGTCTGTTTCTTCATCGCAAAGCCTCTGGGCTCTGATTGTGG
GTCCCCGGCTCTAGCCCTGCTCCATGCCTAGTGCCCAAGATTGTTGAGGT
GACAGATGCAAGAATGCTTCTGTCCTGGCTCCAAAACAGCCATCGTATAT
CTGAGAGATGGAATTGGGCCCAGTGAAATGGCTGTATGGGCTTGAACATG
ACATGTAAGCTTGGTAACCATCTCCCACATCATCTTCTCATTTCAGGTGT
ATGGTGAGACTTGGCTTCCTGAATGCTGTCCTCTGGGCTCCTCATGTTTC
CTTACTC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAAAACAGTATGTGGGTACAAGATTGAAAGTAAA
AAAAAAAATCTATAGCCTCCTATAGGACAGAAAATATATTTTAAAAAGCA
GGAAAATTTTTTAAAAAGCTGCTGATTTTGTGTGTATGAATTGTCTGTGC
TAGAACCTTGCTGCCTGTGTTCATTGGCTGCAGGATTTCTCTCTGGAGTC
TGGGGTTTCGATGAACAGAATCACTTCACATGAAAACACGGAATCTTTGA
CGTCTCCCTCCTCCTTTCAAATCCCTTTATCTTTCTCTCTTGCCTTTTTG
TGATGGCTATTTTCTTCAACCACCCCACCTGAACAGGTATGGAGAGAGTG
GACATTCTTGCCTTGTTCCTGACCTTAAAGGAAATGCTTGGAGTGTGTCT
CCATTTANAATGTCCAACTCGGAGCTGGAGAGATGGCTCGGTGGTTAAGA
GCACCCTCTGTTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACAT
GGTGGCTCACAACCATCTGTAATGAGATCTGATGTCCTCTTCTGGTATGT
CTGAAGACAGCCACAGCATATTCGTATAAATAAAATAAATAAATCTCTTA
AAAAAAATAAAAGAATGTTCAAATCTATGTAAACCCAAAGAAGGGGCTCA
TGTGCTAAGAGCTAGTAACTCCACTGTGGATCTCAGACTCCAGACTTCTG
CCCCGTGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_c17.b1 MSMg01no275_c17.b1 CHROMAT_FILE:
MSMg01no275_c17.b1 PHD_FILE: MSMg01no275_c17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:51 2005
         (238 letters)



>mm_chr4_142079452_142080089
          Length = 638

 Score =  424 bits (219), Expect = e-123
 Identities = 231/235 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtagaagtctatttgatgggaaaattgtatcaagcaattgtctactcgtctgccttatt 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 tgtagaagtctatttgatgggaaaattgtatcaagcaattgtctactcttctgccttatt 260

                                                                       
Query: 61  ttatgccagggacgtgtaaaacaatttataaggcaactcttggcaccccaagcccatatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttatgccagggacgtgtaaaacaatttataaggcaactcttggcaccccaagcccatatt 320

                                                                       
Query: 121 actaagtgtgtgtgctgtcaggaggagcttgtgtctgttcagatcgatgtgagctatgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actaagtgtgtgtgctgtcaggaggagcttgtgtctgttcagatcgatgtgagctatgct 380

                                                                  
Query: 181 gtactctcccatcctgtgatctggacggcactgggacccccactgtccagtggta 235
           |||||||||||||||| |||||||| ||||||||||||||||||||| |||||||
Sbjct: 381 gtactctcccatcctgggatctggatggcactgggacccccactgtctagtggta 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)