BAC Information

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BAC

Clone NameMSMg01-275E13
Chromosome4 (Build37)
Map Location 45,005,449 - 45,005,806
singlet/doubletsinglet
Overlap geneZbtb5
Upstream geneClta, Gne, LOC100040313, OTTMUSG00000007209, Rnf38, Melk, Pax5, 5730488B01Rik, LOC545618, Zcchc7, D4Wsu132e, Grhpr
Downstream gene1700055D18Rik, Polr1e, Fbxo10, 1110019J04Rik, Frmpd1, Rg9mtd3, Exosc3, LOC666325, Wdr32, Mcart1, Shb, LOC100040140, LOC100040557, Gm829, LOC100040567, LOC100040580, Aldh1b1, Igfbpl1, 1300002K09Rik, Tdrd7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275E13.T7 (MSMg01no275_e13.b1)MSMg01-275E13.TJ (MSMg01no275_e13.g1)
ACCAG413780AG413781
length746745
length of high quality
(start - end)
605 (66 - 670)358 (378 - 735)
definitionCHROMAT_FILE: MSMg01no275_e13.b1 PHD_FILE: MSMg01no275_e13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:00 2005CHROMAT_FILE: MSMg01no275_e13.g1 PHD_FILE: MSMg01no275_e13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:00 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCATGTGGATACCGCATCCTCATGTATGAATTTGTACACACACACCCAT
ATATACATATATACGATTTACATATATATATTTTAAAGCTGGATGTTGGA
CCGGGTGGTATACCACTACGATACCACCAGCCTTGTCAGGTGGAGGCAAG
AAGATCAAGAGTTCAGGGTTAGTTTTGGCTACATAGTGAGATCAAGGACA
GCCTGGGTTATGAGATCCTGTTCCCAGACAAGTAACAACAACAAACGTTG
GAGGACTGGTACTACCTGGTTTATAGACTTACTACAAAACTGAAGTAATC
AGGAGAAGAAAATATTAGGGAAAGGTTAAACATTTAGATAAAGGGACAGA
ACGGAGTCCAGACACAGACCTACACGTGTGTGGTGAATTCTTTTTCTTAA
AGACAATTCAATGGGAAAAAGATAACCTTTTTAGCAAATGGCACTAAACC
AATTGCGAAAGCCGAAACAGCAACAGCTCATGCATCCCTCGTAGCACATT
ACAAACGTTAACTCAAAACGGAGCATAGCCCAGGTCTGAGGAGATTGCTC
AGTGGTTAGGAACACTGGCTGCTCTGGCAGAGGACCTGGGTTCCACTCAC
AGCACCCAGATGCTCACAACTACCTATAAGTCTAGCTTCAGGAGATCTGA
TGCCTTCTTCTGCCTCTATTTCCGTGCACATCCATACATGCATGCN
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTATGCTTTAGGCTGCCTGACTCTTCCAGAGCC
TGTGAAGAACTTTTGCCCATGAACACTCCTACAGTTAAGTCTGATTCAAC
ACTGAGTTAGAGGAGGGACACCACTGAAAGCTGAGGTGTAGCTGTGAGAG
CGTATGCAACAGGAAGAAAACTACAGCAGCGCTGCTGTGGTTAGTCTAAC
TGGTTATGCCCAGGAGAGGTGTTCTATGGCGCTTGGGAGTGAGACGTGAC
AAGGTCAAGGGCAGCTGATCTTGGGTGGCCTTGGGCATCCAGATGGCGTG
AAAGTTTTTTGTTCCGCGCCAACCCATACACAGGACTCCGTATCACCAGA
GGAAAGACGGACACTAGCTTCCCACTTACATCAAACAAGTACAGTATCAG
AAATACACGTTGGTTAAAACCCTGCTAACACAGCACGGACAGAAACACCT
CACTGTCACTCCTACAAGTACACACTCCATTACAACTTTAGTTCTTAAAA
CAAACAGAAAAGTTACTAAAAACACCTATGCCATAGAGATGTATTCGAAA
GTCTATACACCTGTTAGTCCAAGGGCATATTTCCCTGGACTCTGTGTGAG
CACCATCAGAGGGCAGTGCCTGTGACTGCAACTCAGATACAAATAAAGAA
TCCACAGGACTTTCAGAGGCCTGGGACTAGCTCAGGATACACTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_e13.g1 MSMg01no275_e13.g1 CHROMAT_FILE:
MSMg01no275_e13.g1 PHD_FILE: MSMg01no275_e13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:00 2005
         (358 letters)



>mm_chr4_45005249_45006006
          Length = 758

 Score =  663 bits (343), Expect = 0.0
 Identities = 355/359 (98%), Gaps = 2/359 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acacaggactccgtatcaccagaggaaagacggacactagcttcccacttacatcaaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acacaggactccgtatcaccagaggaaagacggacactagcttcccacttacatcaaaca 260

                                                                       
Query: 61  agtacagtatcagaaatacacgttggttaaaaccctgctaacacagcacggacagaaaca 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 agtacagtatcagaaatacacgttggttaaaaccctgctaacacagcacgaacagaaaca 320

                                                                       
Query: 121 cctcactgtcactcctacaagtacacactccattacaactttagttcttaaaacaaacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctcactgtcactcctacaagtacacactccattacaactttagttcttaaaacaaacag 380

                                                                       
Query: 181 aaaagttactaaaaacacctatgccatagagatgtattcgaaagtctatacacctgttag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaagttactaaaaacacctatgccatagagatgtattcgaaagtctatacacctgttag 440

                                                                       
Query: 241 tccaagggcatatttccctggactctgtgtgagcaccatcagagggcagtgcctgtgact 300
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 tccaagggcatatttccctggactcagtgtgagcaccatcagagggcagtgcctgtgact 500

                                                                      
Query: 301 gcaactcagatacaaataaagaa-tccacaggactttcagaggcctgggactagctcag 358
           |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 501 gcaactcagatacaaataaa-aactccacaggactttcagaggcctgggactagctcag 558


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 358
Length of database: 758
Length adjustment: 9
Effective length of query: 349
Effective length of database: 749
Effective search space:   261401
Effective search space used:   261401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)