BAC Information

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BAC

Clone NameMSMg01-275F04
Chromosome4 (Build37)
Map Location 35,355,852 - 35,356,165
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665367, 2700059D21Rik, Orc3l, Rars2, Slc35a1, 1700003M02Rik, Gm136, 1810030N24Rik, Zfp292, Cga, Mobkl2b, Ifnk, 3110043O21Rik, LOC620559
Downstream geneLOC621227, Lingo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275F04.T7 (MSMg01no275_f04.b1)MSMg01-275F04.TJ (MSMg01no275_f04.g1)
ACCAG413809AG413810
length756757
length of high quality
(start - end)
318 (44 - 361)276 (75 - 350)
definitionCHROMAT_FILE: MSMg01no275_f04.b1 PHD_FILE: MSMg01no275_f04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:02 2005CHROMAT_FILE: MSMg01no275_f04.g1 PHD_FILE: MSMg01no275_f04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTACATTAATTAAGCTTTTTCTATATAGGTACAAGATTAACAGTAAAT
AATTGAGGAGGCGGAGGGCGCGGAGGATTCCCTAATACTGTAATTCAGTC
AGCTTAACCTTGGATTCCACAAAATACTATAGTAGCTGTCCTGTGAATTC
CCTTTGACTGGGTTAACTGAGTTGTTTTCTATTGCTTGTGATCAAATTCA
TCTGGCGATTGTGGGTGATTATCACACAGCATTGGAGTGCCAAAGGGCAA
GACCAATGCTAGCCCAATGGGCAAACGACTTCTACTTTTCCCACCTTTCC
TTCTTATCTTTATTTATACCCTCCCCCCCTCACAGAGATGCTAGAGCTAT
GGCTTTGTCATTATTTACTTTTGACATAGAAAAACTGTCATTTGACAGAC
AGAGGTAACAGTGATGTTAAGAAAGATTCTCTCTTAAAGCCCTTGTAGAA
CTGGTACACTGACTGTGGAGCCTGAGGTCATTGCTCAAAAGATCCTGCAG
TTATATACAAACACAGCAAAGCTGTGCTTCTAAACCCACACACACACACT
TTTCCTTATGCTGAAGAACTAGCCACCCCTTGACACACAAGTGATCCCTG
AATGAGGAAACATTAGGCATTCGGAGGTAAGTCCAAGACACACAATTCTT
ATTCTATTCTATGATAGTGGTGTCCCCTGACACTGTAGTGGTTGCTGCTA
GATGAA
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAACCACTCTTAAGGTCAGGCCCCAT
TCCCAGAAATAGATGGCCAACACCAAACAAACCCAATGCCTTTTTGGAGG
TCCTTTGTCTCAATGCTTTGTTGGAGCATTTTAAAAATCACCTTACAGAT
CCTTTCTGTATGTACTATTGTTTCCAGTTTTGTGCTTTCATTGTTTTTGT
GTGTGTGACCCTGTGTGTCTCTGGGTCTATTTGTATGGATTTCTTGCACT
TTGTCCTTGTTTTTTTTTTTTTTTTTTTTCGCCTATGGGTTTATTTTCTT
CAACCCTGGTAGTANGGTCTTTGGCTTATNCCCCCCCATTTTATTTTTAC
TTTTTAGATGCCTATTTGTCTAAAAAAAAAAAAAAAAGACGGGTGTGGAT
TTGGATGGAAGGACAAGTGGGGAGGTACGAAGGGAGTTAGAGGACAGGAA
ACTGTCGTCTTCATATATTGTAAGGAAAATAAATGAAAGGTCTGTTTTTA
TTTGTTTACTATGTTACAGGGTTTGCTCACATTTATTCTATATTCCAGAA
AAAAGAACCAGGTCCCACAAATGGCTGTGAGCCACCATGTGGTTGCTGGA
AATTGAACTCAGGCCCTGTGTAATAACATCTGGTGCTCTTTAACCACTGA
ACCATCTCTTCCCCCCCCCTTTCAAAACTATTTTCTATTCAAAATTATTT
TAATCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_f04.b1 MSMg01no275_f04.b1 CHROMAT_FILE:
MSMg01no275_f04.b1 PHD_FILE: MSMg01no275_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:02 2005
         (318 letters)



>mm_chr4_35355649_35356365
          Length = 717

 Score =  594 bits (307), Expect = e-174
 Identities = 313/315 (99%), Gaps = 1/315 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctacattaattaagctttttctatataggtacaagattaacagtaaataattga 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ggaattctacattaattaagctttttctatataggtacaagattaacagtaaataattga 458

                                                                       
Query: 64  ggaggcggagggcgcggaggattccctaatactgtaattcagtcagcttaaccttggatt 123
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ggaggcggagggcgtggaggattccctaatactgtaattcagtcagcttaaccttggatt 398

                                                                       
Query: 124 ccacaaaatactatagtagctgtcctgtgaattccctttgactgggttaactgagttgtt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ccacaaaatactatagtagctgtcctgtgaattccctttgactgggttaactgagttgtt 338

                                                                       
Query: 184 ttctattgcttgtgatcaaattcatctggcgattgtgggtgattatcacacagcattgga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ttctattgcttgtgatcaaattcatctggcgattgtgggtgattatcacacagcattgga 278

                                                                       
Query: 244 gtgccaaagggcaagaccaatgctagcccaatgggcaaacgacttctacttttcccacct 303
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 gtgccaaaggg-aagaccaatgctagcccaatgggcaaacgacttctacttttcccacct 219

                          
Query: 304 ttccttcttatcttt 318
           |||||||||||||||
Sbjct: 218 ttccttcttatcttt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 717
Length adjustment: 9
Effective length of query: 309
Effective length of database: 708
Effective search space:   218772
Effective search space used:   218772
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)