BAC Information

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BAC

Clone NameMSMg01-275F13
Chromosome4 (Build37)
Map Location 29,430,428 - 29,431,121
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040773, Epha7, LOC100040907, LOC100040811
Downstream geneLOC665185
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275F13.T7 (MSMg01no275_f13.b1)MSMg01-275F13.TJ (MSMg01no275_f13.g1)
ACCAG413826AG413827
length751753
length of high quality
(start - end)
697 (44 - 740)235 (123 - 357)
definitionCHROMAT_FILE: MSMg01no275_f13.b1 PHD_FILE: MSMg01no275_f13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:04 2005CHROMAT_FILE: MSMg01no275_f13.g1 PHD_FILE: MSMg01no275_f13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCCATATCGGTTATTTACCTTAATAGTTGTGCTGATGCCTCTGTAAG
TCAGGATGCTTTATAAAAGAATTGAGCTTCAATTGCTAAAGTGAGACTTT
TCTGTTTTCACACTAAAGGAGAAAATTCTATCTTTCTATAATTCCCCAGA
TGTGTCATGTTCTAGTTTATTTTTTCAAGTAAGTGTTATATGGTGAATAC
AATATTAATTTAGCAACTTATTCTAACAATAGAAATGTTATTAGAGGAAC
AGAGTATTCACTTATCCTATTGAAAATTTGCAGCTAGCAAAAAGCATTAC
TGTAAAAAGTAGAACTTAGGTAGTCTGCCTTAACCTCAGAGTTCTTAAAT
CTTCTAGGAGCAAATAAAATGGAAAATAGTTACTCCTTAAACAAATAACA
AAAATATATTACGGTATCTCACTAGATGATGAGTCTGAGATAGTCCATTG
AGGTTTAAATATACCAACTTTCATTCTAAGGACTTCAGTGTCTAAAATTT
CTTCAATATAGTATATCAAACATAAGGAGTGACAAAGTCATGTTTATTTC
ATTCATTTGTTTATCTAAATACAGTTAGGACTTGTGATAATATGCTGTAG
TTTACATAACACCACTTGGAATAGTTCAGAACTCATTAGCACAGGAAAAG
TCTTCCTCAACAGAACACCATTAGCACAGGCACTAAGAATAACAATTGGC
N
TTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTGACACAAAAAATTCAGAATACTGAGTTACCTGAGAAAGAAA
GCTACAGACTGGTTTTGAACGCAGTCCAAGTGAGAAAAGTGTGTCGCAGT
CATCAAACTTGACATGGAGATCTAAAATCAGGAGTTTGCCCTGATGGTTT
TCTGCATGCTTAGGTCCAGTGTTTCCTCACTCTGCTCCCTTTCCTCCATA
TGTGAATGGTATTATATGTTCTATGTCACTGTCTGTTGGAAGTATATGAT
TTACTTGTTTTTTTGATTTTATAGTGACTTACAGTTAAGAGCTTGCCATG
AACCTTTTTTTTATACTTGCACCTCTGGACTTTTAAATGGCACTGAGACT
GTTAGACTATGAAGACTCTTGAAAATAGAACCAAATACATTTTTTTTGTC
CATGAATGAATTCCACATATGGCTACAAGCATATGGAGGTCAGGAAGTTG
AAGGTGGTGTTTGGAAAAATGGCCTCCATAGGCTCAGAATATTCACCACA
GGGAGTGGAAGGTACTCTTTGATGGAATTAGAAAGATTAGGATATGTGAT
CATCTTGAAGGAAATGTATCAATGACGATGAGCTTTGAGATTTCAAAAGT
TCATTTCGGTTTCCATCCTGTGGATATAGACAAGGAATTCTCCACTGCTT
CTCCAGAACTCTGTCTTGCGCTGTCATCCTTCCCACCATGATAATAATGG
ATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_f13.b1 MSMg01no275_f13.b1 CHROMAT_FILE:
MSMg01no275_f13.b1 PHD_FILE: MSMg01no275_f13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:04 2005
         (697 letters)



>mm_chr4_29430224_29431321
          Length = 1098

 Score = 1280 bits (662), Expect = 0.0
 Identities = 686/694 (98%), Gaps = 1/694 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcc-atatcggttatttaccttaatagttgtgctgatgcctctgtaagtcagga 63
           ||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctccaaaatgggttatttaccttaatagttgtgctgatgcctctgtaagtcagga 264

                                                                       
Query: 64  tgctttataaaagaattgagcttcaattgctaaagtgagacttttctgttttcacactaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgctttataaaagaattgagcttcaattgctaaagtgagacttttctgttttcacactaa 324

                                                                       
Query: 124 aggagaaaattctatctttctataattccccagatgtgtcatgttctagtttattttttc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aggagaaaattctatctttctataattccccagatgtgtcatgttctagtttattttttc 384

                                                                       
Query: 184 aagtaagtgttatatggtgaatacaatattaatttagcaacttattctaacaatagaaat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aagtaagtgttatatggtgaatacaatattaatttagcaacttattctaacaatagaaat 444

                                                                       
Query: 244 gttattagaggaacagagtattcacttatcctattgaaaatttgcagctagcaaaaagca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gttattagaggaacagagtattcacttatcctattgaaaatttgcagctagcaaaaagca 504

                                                                       
Query: 304 ttactgtaaaaagtagaacttaggtagtctgccttaacctcagagttcttaaatcttcta 363
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttactgtgaaaagtagaacttaggtagtctgccttaacctcagagttcttaaatcttcta 564

                                                                       
Query: 364 ggagcaaataaaatggaaaatagttactccttaaacaaataacaaaaatatattacggta 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggagcaaataaaatggaaaatagttactccttaaacaaataacaaaaatatattacggta 624

                                                                       
Query: 424 tctcactagatgatgagtctgagatagtccattgaggtttaaatataccaactttcattc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tctcactagatgatgagtctgagatagtccattgaggtttaaatataccaactttcattc 684

                                                                       
Query: 484 taaggacttcagtgtctaaaatttcttcaatatagtatatcaaacataaggagtgacaaa 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 taaggacttcagtgtctaaaatttcttcaatatagtatatcaaacataaggagtgacaaa 744

                                                                       
Query: 544 gtcatgtttatttcattcatttgtttatctaaatacagttaggacttgtgataatatgct 603
           |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gtcatgtttatttcattcgtgtgtttatctaaatacagttaggacttgtgataatatgct 804

                                                                       
Query: 604 gtagtttacataacaccacttggaatagttcagaactcattagcacaggaaaagtcttcc 663
           |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 805 gtagtttaaataacaccacttgcaatagttcagaactcattagcacaggaaaagtcttcc 864

                                             
Query: 664 tcaacagaacaccattagcacaggcactaagaat 697
           ||||||||||||||||||||||||||||||||||
Sbjct: 865 tcaacagaacaccattagcacaggcactaagaat 898


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 697
Length of database: 1098
Length adjustment: 10
Effective length of query: 687
Effective length of database: 1088
Effective search space:   747456
Effective search space used:   747456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)