BAC Information

Click to search

BAC

Clone NameMSMg01-275K15
Chromosome4 (Build37)
Map Location 81,669,083 - 81,669,622
singlet/doubletsinglet
Overlap genenone
Upstream geneMpdz, LOC100040131, LOC100040144, EG668895, LOC100040164
Downstream geneEG545641, Nfib, Zdhhc21, Cer1, Frem1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275K15.T7 (MSMg01no275_k15.b1)MSMg01-275K15.TJ (MSMg01no275_k15.g1)
ACCAG414050AG414051
length756755
length of high quality
(start - end)
544 (41 - 584)287 (70 - 356)
definitionCHROMAT_FILE: MSMg01no275_k15.b1 PHD_FILE: MSMg01no275_k15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:26 2005CHROMAT_FILE: MSMg01no275_k15.g1 PHD_FILE: MSMg01no275_k15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCAAAGAATAACCCGAGTCTTCAAATAGTGGTGAGCTAGAATTAGCACGT
ATAAACTACTGAGAGATATTTCGCCAAAATTTTAGGGATTTTTCTGTTAT
AGCATTATGAAATGCAGTTATTATTTAAAACAAAATCCATGAACTTCCCA
TTAATGTATATAGTGCCTGTGAGTGAATTGTTTTTGCTTCATGTCATTGT
TGCTTTTGAGCTAACCACATTAAAGTCTGAAGGTGATAGCACTTCACGAT
GGTATGTTGTGCATGTCTTTCACACTCGGTCTTCATTGTCAACAGCCGAT
GATGAGATGATATGTAGTACTGAAAAAAATGCTAAAATATATGGTATGGT
TTATTATATAGATGACTGTCTATATGTAGATTGCCATTTATTCTAAGAAG
GACCACATAGTAAATATTTTAAGGCCCTCTTTATGGCACAGCTGCATCTG
TAGTATGAAGGCTACTATTCACAATATGTAAATAAACAGGTGTCACTGTG
TTCCTGTGAAACTTTATTTACAGAGAGAAACGTTGGCTCACATTGGTCTG
CCAGCCATAATTTGCTGACTGACTCCTGACTTATGCTTTCCAAAGCAATG
CGCAAGGTGTTATTCTTGTTGTGAAAGTTCCTGTCCACCTATTGACAACT
ACTCAAACCTTGTGACCTTTTCTTTTTTTTCTGAACCATAGACCTATCTG
AATTAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTTAATCCACTTAGATTTGACCTTAATACAA
GGAGATAGATGGATTAATCTGCATTTTTCTACATGATAACAGCCAGTTGT
GTCAGCACCATTTGTTGAAAATGCTGTCCTTTTTCCACTGGATGGTTTTA
GCTCCCTTGTCAAAGATCAAGTGACCGTAGGTGTGTGGGTTCATCTCTGG
GTCTTCAATTCTGTTCCATTGGTCTACTTGGCTGTCACTATACCAGTACC
ATGCAGTTTTTATCACAATTGCTCTGTAGGCTTTAGGCCAGGCTTGGTGA
TTCCACCTTATGTTCTTTCACCCCTCGCACAAGAGTTTTTTCTATCCTAG
GTTTTTTGTTATTCCAATTGCCCTTTCAAAATCATTGAAGAATTGAGTTG
GAATTTTGATGGGGATTGCATTGAATCTGTAGATTGCTTTTGGCAAGATA
GCCATTTTTACAATGTTGATCCTGCCAATCCATGAGCATGGGAGATACTT
CCATCTTCTGAGATCTTCTTTAATTTCTTTCTTCAGAGACTTGAAGTTCT
TATCATACAGATCTTTCACTTCCTTAGTTAGAGTCACGCCAAGGTATTTT
ATATTATTTGTGACTATTGAGAAGGGTGTTGTTTCCCTAATTTCTTTCTC
AGCCTGTTTATCCTTTGTGTAGAGAAAGGCCATTGACTTGTTTGAGTTAA
TTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_k15.b1 MSMg01no275_k15.b1 CHROMAT_FILE:
MSMg01no275_k15.b1 PHD_FILE: MSMg01no275_k15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:26 2005
         (544 letters)



>mm_chr4_81668880_81669822
          Length = 943

 Score =  992 bits (513), Expect = 0.0
 Identities = 534/541 (98%), Gaps = 1/541 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctcaaagaataacccgagtcttcaaatagtggtgagctagaattagcacgtata 63
           ||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctcaaagaataaaatgagtcttcaaatagtggtgagctagaattagcacgtata 263

                                                                       
Query: 64  aactactgagagatatttcgccaaaattttagggatttttctgttatagcattatgaaat 123
           || ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aattactgagagatattt-gtcaaaattttagggatttttctgttatagcattatgaaat 322

                                                                       
Query: 124 gcagttattatttaaaacaaaatccatgaacttcccattaatgtatatagtgcctgtgag 183
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gcagttattatttaaaataaaatccatgaacttcccattaatgtatatagtgcctgtgag 382

                                                                       
Query: 184 tgaattgtttttgcttcatgtcattgttgcttttgagctaaccacattaaagtctgaagg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgaattgtttttgcttcatgtcattgttgcttttgagctaaccacattaaagtctgaagg 442

                                                                       
Query: 244 tgatagcacttcacgatggtatgttgtgcatgtctttcacactcggtcttcattgtcaac 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tgatagcacttcacgatggtatgttgtgcatgtctttcacactcggtcttcattgtcaac 502

                                                                       
Query: 304 agccgatgatgagatgatatgtagtactgaaaaaaatgctaaaatatatggtatggttta 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 agccgatgatgagatgatatgtagtactgaaaaaaatgctaaaatatatggtatggttta 562

                                                                       
Query: 364 ttatatagatgactgtctatatgtagattgccatttattctaagaaggaccacatagtaa 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ttatatagatgactgtctatatgtagattgccatttattctaagaaggaccacatagtaa 622

                                                                       
Query: 424 atattttaaggccctctttatggcacagctgcatctgtagtatgaaggctactattcaca 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 atattttaaggccctctttatggcacagctgcatctgtagtatgaaggctactattcaca 682

                                                                       
Query: 484 atatgtaaataaacaggtgtcactgtgttcctgtgaaactttatttacagagagaaacgt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 atatgtaaataaacaggtgtcactgtgttcctgtgaaactttatttacagagagaaacgt 742

            
Query: 544 t 544
           |
Sbjct: 743 t 743


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 943
Length adjustment: 10
Effective length of query: 534
Effective length of database: 933
Effective search space:   498222
Effective search space used:   498222
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)