Query= MSMg01no275_o15.b1 MSMg01no275_o15.b1 CHROMAT_FILE:
MSMg01no275_o15.b1 PHD_FILE: MSMg01no275_o15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:44 2005
(660 letters)
>mm_chr4_120341753_120342812
Length = 1060
Score = 1203 bits (622), Expect = 0.0
Identities = 648/657 (98%), Gaps = 2/657 (0%)
Strand = Plus / Plus
Query: 5 gaattcataagtggttactttaactaccaagtaggagggaatgcaagaccaccgcaccaa 64
||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattaataagtgggtagtttaactaccaagtaggagggaatgcaagaccaccgcaccaa 264
Query: 65 gccatgcgtggtaacccacacctgtaatctgacattgaggaagctgagttcgaagtcagc 124
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gccatgcgtggtgacccacacctgtaatctgacattgaggaagctgagttcgaagtcagc 324
Query: 125 ctgcactgcagagtgagttctagactaacctataagattagtaacctggaccccttagta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctgcactgcagagtgagttctagactaacctataagattagtaacctggaccccttagta 384
Query: 185 agattcctgtctcaaaagagaaaaaagtgggggagagggtgctaaatacagatttaaggt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agattcctgtctcaaaagagaaaaaagtgggggagagggtgctaaatacagatttaaggt 444
Query: 245 agagatcctgctggcatgtacaaggtcctggctttaattcccagcaccaaaaccaaaaca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agagatcctgctggcatgtacaaggtcctggctttaattcccagcaccaaaaccaaaaca 504
Query: 305 atcaaaatgcctgtcaccctcccaagagggaccactgacaagctggtcagcagacagatg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atcaaaatgcctgtcaccctcccaagagggaccactgacaagctggtcagcagacagatg 564
Query: 365 ggcagagaagataagactagaacagctcaccaggccctggcccgatagctgcaggtgaaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggcagagaagataagactagaacagctcaccaggccctggcccgatagctgcaggtgaaa 624
Query: 425 aagaaatgaactcagagtctctttaccacataaccagttctagaacattctcaggagctg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aagaaatgaactcagagtctctttaccacataaccagttctagaacattctcaggagctg 684
Query: 485 cctgacctcagacaaagtcccctgaccgatgagt-cttagcacgtgacttcctgtggtgt 543
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 685 cctgacctcagacaaagtcccctgaccgatg-gttcttagcacgtgacttcctgtggtgt 743
Query: 544 ctttcacctcgtcctgagagccggcctcttanagcagcctgctgcccttctgtcctgagg 603
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 744 ctttcacctcgtcctgagagccggcctcttaaagcagcctgctgcccttctgtcctgagg 803
Query: 604 acctcagtctcctgcctgggcagtgtctgcccagatctttaaattcagtctccctag 660
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 804 acctcagtctcctgcctgggcagtgtctgctgagatctttaaattcagtctccctag 860
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space: 682500
Effective search space used: 682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no275_o15.g1 MSMg01no275_o15.g1 CHROMAT_FILE:
MSMg01no275_o15.g1 PHD_FILE: MSMg01no275_o15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:44 2005
(376 letters)
>mm_chr4_120488351_120489126
Length = 776
Score = 719 bits (372), Expect = 0.0
Identities = 375/376 (99%)
Strand = Plus / Minus
Query: 1 actttgatattattaagtttttcttttattaactcaacctggttttattctgttaataat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 actttgatattattaagtttttcttttattaactcaacctggttttattctgttaataat 517
Query: 61 gatcaaacaaaaacctggaaatagatgattacaactttctaagcttttgcacattgcttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gatcaaacaaaaacctggaaatagatgattacaactttctaagcttttgcacattgcttt 457
Query: 121 tctggtttactgccataggttactgtagcaatatcttacagacaccgttcagggccaatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tctggtttactgccataggttactgtagcaatatcttacagacaccgttcagggccaatc 397
Query: 181 agaagcagtgaaattaccttcagttttttaaatggaactccatagccaatagaaaatcct 240
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 396 agaagcagtgaaattaccttcaattttttaaatggaactccatagccaatagaaaatcct 337
Query: 241 ttaggtcggaaatgtagcgaccctttctttcgttttttaaaggacaattctaaatttgcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ttaggtcggaaatgtagcgaccctttctttcgttttttaaaggacaattctaaatttgcc 277
Query: 301 ctcccctgttttagaagcgcatgagaccatatgtgtctgctgtgtacatttgctaaatat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ctcccctgttttagaagcgcatgagaccatatgtgtctgctgtgtacatttgctaaatat 217
Query: 361 ttccgatccttaagtt 376
||||||||||||||||
Sbjct: 216 ttccgatccttaagtt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 776
Length adjustment: 9
Effective length of query: 367
Effective length of database: 767
Effective search space: 281489
Effective search space used: 281489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
