BAC Information

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BAC

Clone NameMSMg01-275O16
Chromosome4 (Build37)
Map Location 130,220,496 - 130,221,204
singlet/doubletsinglet
Overlap genePum1, LOC622577
Upstream geneLck, BC030183, Eif3s2, 2510006D16Rik, LOC667452, Iqcc, Ccdc28b, Txlna, Kpna6, Tmem39b, Khdrbs1, LOC100040532, Ptp4a2, LOC622469, LOC622480, 1700003M07Rik, Bai2, Col16a1, Pef1, Hcrtr1, Tinagl, Gm853, Serinc2, Fabp3, Zcchc17, Wdr57, 2610200G18Rik
Downstream geneSdc3, Laptm5, Matn1, LOC622681, LOC100041575, Gm831, EG664832, LOC100039799
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275O16.T7 (MSMg01no275_o16.b1)MSMg01-275O16.TJ (MSMg01no275_o16.g1)
ACCAG414239AG414240
length757754
length of high quality
(start - end)		713 (41 - 753)585 (70 - 654)
definitionCHROMAT_FILE: MSMg01no275_o16.b1 PHD_FILE: MSMg01no275_o16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:44 2005CHROMAT_FILE: MSMg01no275_o16.g1 PHD_FILE: MSMg01no275_o16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TGTAACATCTTGGCACTGACAGAACAAAAACTAATAATCTGTCACCTAAG
TACCAGAAAACAAGAAACTGATGGTACCTTTTAGGGTCTCTCAACACTCA
CTAAGAAATTATGTGCAGTATTTAAAATTTGATTTTTTTAAGCAAATGAC
CTATCATTTAGAAACAAATATTTTAAGCAATGCAATGAAGTAGCAAGCCT
AGTCTAGTACTTCCTAGCTTTCACACTGTCAAGATCACAGTGGAGTTTGT
TTTTACTTTTTCTTTTTAATATCACTAATAGTACTTTTCTTTAAACAAAA
CAGCATGGTTTATTCTATCTCCATTCACTAAGATGCTCAGGGCTGATAGG
TGTTTATTTTTACTACACTGAACAAACCTTCTGTGGACATAAATTTATCT
TAAAGCAGTTCACAGACTCAAACTAAACAAATCCCAACTTCAAAAAGCTG
TGGCCTTAGACAAGATGAACTCAAGCGTGGAAAGACAAAATACTAGAAGT
TCAGAATCCAGTATTTCCAAACCTTCAGATAAAGATCCGCAGCCCCTAGT
GTTTTACAAAGTTACAATGAGCAAAGGGTCAAAATGGTTTACTAAAAACC
CTGAAGGAAGCTGCTTATCTTAAAAGGAGAGCCACATTAGTAACTTTTAC
ACCAAAGCAAACAGCTCAAGCTACAATCCTACCTTCAGAAGTAACTGGCT
TTAAAAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACTTTGTAGGCCAGCCTCAAACTGAGAAATC
TGCCTGCCTCTGCCTTCCGAGTGCTGAGATTAAAGGCATGTGCCACCATG
CATGGCACACTTTTTTTTTTTTTTTAAGATTTATTTATTATATGTAAGTA
CATGGTAGCTATCTTCAGACATCCCAGAAAAGGGCATCAGATCTCATTAC
GGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCACGACCTT
CAGAAGAGGAGTCGACGATCTTAACCACTGAGCCATCTCCCCAGCCCTGG
GATGAACTCTTATCTCTCTGGAACCACAAGTTCAAATAAAGTCTTCCTTT
GACAATTTGCCTTGGTTGTGGTGTTTTATTTATTTATTGTTTATTTATTT
TATGTATTNTGGTTTTTTTGAGACAGGGTTTTTCTGTATAGCTTTGGTTG
TCCTGGAATTCACTTAGAAGACCAGACTTGCCTCACACTCACAGTGACCT
GCCTGCCTCTACCTCTTCAGTGCTGTAATTAATAAAGGCCTGCACTGCCA
CCGCCCGCCCAGTGGTCCTGGTATTTTATCACAAAATCAACAACGTGACT
AACATAGGCCTACAATTGACTTGTTTCCTTAACATTTCTACTGGGGTCAT
TATTTAGAAACTGACAAATTCTTATTTGAAATATTGATTTGGCTGGTTGC
TTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_o16.b1 MSMg01no275_o16.b1 CHROMAT_FILE:
MSMg01no275_o16.b1 PHD_FILE: MSMg01no275_o16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:44 2005
         (713 letters)



>mm_chr4_130220292_130221404
          Length = 1113

 Score = 1355 bits (701), Expect = 0.0
 Identities = 707/709 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgtaacatcttggcactgacagaacaaaaactaataatctgtcacctaagtacc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 913 gaattctgtaacatcttggcactgacagaacaaaaactaataatctgtcacctaagtacc 854

                                                                       
Query: 65  agaaaacaagaaactgatggtaccttttagggtctctcaacactcactaagaaattatgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 agaaaacaagaaactgatggtaccttttagggtctctcaacactcactaagaaattatgt 794

                                                                       
Query: 125 gcagtatttaaaatttgatttttttaagcaaatgacctatcatttagaaacaaatatttt 184
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 793 gcagtatttaaaatttgatttttttaagcaaatgacctatcgtttagaaacaaatatttt 734

                                                                       
Query: 185 aagcaatgcaatgaagtagcaagcctagtctagtacttcctagctttcacactgtcaaga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 aagcaatgcaatgaagtagcaagcctagtctagtacttcctagctttcacactgtcaaga 674

                                                                       
Query: 245 tcacagtggagtttgtttttactttttctttttaatatcactaatagtacttttctttaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 tcacagtggagtttgtttttactttttctttttaatatcactaatagtacttttctttaa 614

                                                                       
Query: 305 acaaaacagcatggtttattctatctccattcactaagatgctcagggctgataggtgtt 364
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 acaaaacagcatggtttaatctatctccattcactaagatgctcagggctgataggtgtt 554

                                                                       
Query: 365 tatttttactacactgaacaaaccttctgtggacataaatttatcttaaagcagttcaca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tatttttactacactgaacaaaccttctgtggacataaatttatcttaaagcagttcaca 494

                                                                       
Query: 425 gactcaaactaaacaaatcccaacttcaaaaagctgtggccttagacaagatgaactcaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gactcaaactaaacaaatcccaacttcaaaaagctgtggccttagacaagatgaactcaa 434

                                                                       
Query: 485 gcgtggaaagacaaaatactagaagttcagaatccagtatttccaaaccttcagataaag 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gcgtggaaagacaaaatactagaagttcagaatccagtatttccaaaccttcagataaag 374

                                                                       
Query: 545 atccgcagcccctagtgttttacaaagttacaatgagcaaagggtcaaaatggtttacta 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 atccgcagcccctagtgttttacaaagttacaatgagcaaagggtcaaaatggtttacta 314

                                                                       
Query: 605 aaaaccctgaaggaagctgcttatcttaaaaggagagccacattagtaacttttacacca 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 aaaaccctgaaggaagctgcttatcttaaaaggagagccacattagtaacttttacacca 254

                                                            
Query: 665 aagcaaacagctcaagctacaatcctaccttcagaagtaactggcttta 713
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 aagcaaacagctcaagctacaatcctaccttcagaagtaactggcttta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 713
Length of database: 1113
Length adjustment: 10
Effective length of query: 703
Effective length of database: 1103
Effective search space:   775409
Effective search space used:   775409
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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